YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21C3.08c
Organism:	Schizosaccharomyces pombe
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21C3.08c.

Description	E-value	Query Range	Subject Range
gi\|159125174 - gi\|159125174\|gb\|EDP50291.1\| L-ornithine aminotransferase Car2, putative [Aspergillus fumigatus A1163... gi\|70994128, gi\|... - gi\|70994128\|ref\|XP_751911.1\| L-ornithine aminotransferase Car2 [Aspergillus fumigatus Af293], gi\|668...	370.0	[0..1]	[424..1]
OAT_EMENI - Ornithine aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 1... OAT_EMENI - Ornithine aminotransferase OS=Emericella nidulans GN=otaA PE=3 SV=2	365.0	[0..3]	[424..8]
gi\|83769012 - gi\|83769012\|dbj\|BAE59149.1\| unnamed protein product [Aspergillus oryzae] gi\|169773365 - gi\|169773365\|ref\|XP_001821151.1\| hypothetical protein [Aspergillus oryzae RIB40]	364.0	[0..5]	[424..21]
gi\|1749516, gi\|7... - gi\|7434119\|pir\|\|T42430 probable ornithine-oxo-acid transaminase (EC 2.6.1.13) - fission yeast (Schiz...	364.0	[0..9]	[438..1]
gi\|90299585, gi\|... - gi\|90299585\|gb\|EAS29216.1\| ornithine aminotransferase [Coccidioides immitis RS], gi\|119178208\|ref\|XP...	364.0	[0..1]	[426..1]
gi\|46099166, gi\|... - gi\|71018171\|ref\|XP_759316.1\| hypothetical protein UM03169.1 [Ustilago maydis 521], ref\|XP_400784.1\| ...	363.0	[0..15]	[432..42]
gi\|114192669, gi... - gi\|115397773\|ref\|XP_001214478.1\| ornithine aminotransferase [Aspergillus terreus NIH2624], gi\|114192...	363.0	[0..2]	[424..7]
gi\|111067789 - gi\|111067789\|gb\|EAT88909.1\| hypothetical protein SNOG_03704 [Phaeosphaeria nodorum SN15]	362.0	[0..2]	[438..30]
OAT_EMENI - Ornithine aminotransferase (EC 2.6.1.13) (Ornithine--oxo-acid aminotransferase) - Emericella nidulan...	360.0	[0..3]	[424..8]
gi\|58261240, gi\|... - gi\|58261240\|ref\|XP_568030.1\| ornithine-oxo-acid transaminase [Cryptococcus neoformans var. neoforman...	358.0	[0..2]	[432..6]

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Predicted Domain #1

Region A:
Residues: [1-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAESLLHNT FSTEQIEVLE NEYAAHNYHP LPVCFSKAKG AKVWDPEGRE YLDFLSAYSA  60
   61 VNQGHCHPKI IEALVEQAQR VTLSSRAFYN DKFGPFAKYI TEYFGYEMVI PMNTGAEAVE 120
  121 TACKLARLWG YKAKKIPTDE AIILSCVDNF HGRTMGIISM STDPDARDNY GPYLPNVGPK 180
  181 ISGADRVLRY NNIEDLKYYL DTFGPKVAAF LVEPIQGEAG VMVPDDGYLE EAYKLCKAHN 240
  241 VLFIADEVQT GVARTGKMLC IEHSNVKPDV VILGKAISGG VYPVSAVLSS REIMLNFEPG 300
  301 THGSTYGGNP LGAAVSIAAL EVVKEEKLTE RAAVLGEKFR TALIECKSPI VQKVRGRGLL 360
  361 NAVVIDESKT NGRTAWDLCL IMRSRGVLAK PTHGNIIRFS PPLVITEEDL MKGIEVIKKS 420
  421 LNDLPTIDMT PYAEKPIH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.69897
Match:	1oatA
Description:	Ornithine aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
4-aminobutyrate transaminase activity	9.08769857759091	bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding	8.44659094913875	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	3.359406422625	bayes_pls_golite062009
transferase activity	2.59075614411581	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
5-aminolevulinate synthase activity	1.85905571238884	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.46601963907552	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.46601963907552	bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	1.4383564662931	bayes_pls_golite062009
glutamate decarboxylase activity	1.34215658716536	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.19150094103499	bayes_pls_golite062009
transcription regulator activity	0.977210827616757	bayes_pls_golite062009
nucleic acid binding	0.892872530648552	bayes_pls_golite062009
binding	0.892049641082766	bayes_pls_golite062009
ligase activity	0.827063849687833	bayes_pls_golite062009
DNA binding	0.803965264969424	bayes_pls_golite062009
kynureninase activity	0.777830972119923	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups	0.659071155545801	bayes_pls_golite062009
transcription factor activity	0.597417107954964	bayes_pls_golite062009
N-succinyltransferase activity	0.52897097514616	bayes_pls_golite062009
ornithine-oxo-acid transaminase activity	0.311107335626334	bayes_pls_golite062009
N-acyltransferase activity	0.2609065149092	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
hydrolase activity	0.158765164178244	bayes_pls_golite062009
amine binding	0.14702601411039	bayes_pls_golite062009
methyltransferase activity	0.103986924428507	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.0254276656964899	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: