YRC Public Data Repository - Protein Structure Prediction

Protein:	ned1
Organism:	Schizosaccharomyces pombe
Length:	656 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ned1.

Description	E-value	Query Range	Subject Range
gi\|40746476, gi\|... - gi\|67517043\|ref\|XP_658406.1\| hypothetical protein AN0802.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	871.0	[0..1]	[649..1]
gi\|85111957 - gi\|85111957\|ref\|XP_964186.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28925957, gi\|... - gi\|32420259\|ref\|XP_330573.1\| hypothetical protein [Neurospora crassa], gi\|28925957\|gb\|EAA34950.1\| hy...	818.0	[0..1]	[604..1]
gi\|38567267 - gi\|38567267\|emb\|CAE76557.1\| related to SMP2 protein [Neurospora crassa]	816.0	[0..1]	[604..1]
gi\|38109854, gi\|... - gi\|39951337\|ref\|XP_363385.1\| hypothetical protein MGG_01311 [Magnaporthe grisea 70-15], gb\|EAA55660....	788.0	[0..1]	[594..1]
gi\|46107968, gi\|... - gi\|46107968\|ref\|XP_381042.1\| hypothetical protein FG00866.1 [Gibberella zeae PH-1], gi\|42547616\|gb\|E...	786.0	[0..1]	[589..1]
gi\|83767518 - gi\|83767518\|dbj\|BAE57657.1\| unnamed protein product [Aspergillus oryzae] gi\|169770379 - gi\|169770379\|ref\|XP_001819659.1\| hypothetical protein [Aspergillus oryzae RIB40]	774.0	[0..1]	[639..1]
gi\|116180504, gi... - gi\|88185177\|gb\|EAQ92645.1\| hypothetical protein CHGG_00880 [Chaetomium globosum CBS 148.51], gi\|1161...	755.0	[0..1]	[592..1]
gi\|159131583 - gi\|159131583\|gb\|EDP56696.1\| lipin Smp2, putative [Aspergillus fumigatus A1163] gi\|66850465, gi\|... - gi\|70996150\|ref\|XP_752830.1\| lipin Smp2 [Aspergillus fumigatus Af293], gi\|66850465\|gb\|EAL90792.1\| li...	730.0	[0..1]	[590..1]
orf19.1462, orf1... - SMP2 CGDID:CAL0004653 Assembly 19, Contig19-10119 (40156, 42501) CDS, translated using codon table 1... gi\|46444491, gi\|... - gi\|68466916\|ref\|XP_722373.1\| hypothetical protein CaO19.9037 [Candida albicans SC5314], gi\|68466633\|...	727.0	[0..1]	[648..1]
gi\|44984213, gi\|... - gi\|45198326\|ref\|NP_985355.1\| AFL195Wp [Ashbya gossypii ATCC 10895], gi\|44984213\|gb\|AAS53179.1\| AFL19... gi\|44984213 - gi\|44984213\|gb\|AAS53179.1\| AFL195Wp [Ashbya gossypii ATCC 10895]	725.0	[0..1]	[594..1]

Back

Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYVGRAFDS VTKTWNAINP STLSGAIDVI VVEQEDKTLA CSPFHVRFGK FSLLLPSDKK  60
   61 VEFSVNGQLT GFNMKLGDGG EAFFVFATEN AVPRELQTSP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.408935
Match:	PF04571.5
Description:	No description for PF04571.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.882	0.019	ascospore formation	b.101.1	Ribonuclease domain of colicin E3

Predicted Domain #2

Region A:
Residues: [101-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVSPTTSPKQ TPSINVTEPQ DLELDKVSQD HEKDQSNTYL MEDGYEFPLT RDLIRRSKSD  60
   61 ADQTPPTGFK HLRHSSCLEM AGSDRTPSMP ATTLADLRLL QKAKELGKRL SGKELPTRVG 120
  121 DNGDVMLDMT GYKSSAANIN IAELARETFK DEFPMIEKLL REDEEGNLWF HAS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [274-656]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDAKKFAEVY GHSPPASPSR TPASPKSDSA LMDEDSDLSR RHSLSEQSLS PVSESYPQYA  60
   61 KTLRLTSDQL RSLNLKPGKN ELSFGVNGGK AICTANLFFW KHNDPVVISD IDGTITKSDA 120
  121 LGHMFTLIGK DWTHAGVAKL YTDITNNGYK IMYLTSRSVG QADSTRHYLR NIEQNGYSLP 180
  181 DGPVILSPDR TMAALHREVI LRKPEVFKMA CLRDLCNIFA LPVPRTPFYA GFGNRITDAI 240
  241 SYNHVRVPPT RIFTINSAGE VHIELLQRSG HRSSYVYMNE LVDHFFPPIE VSTRDEVSSF 300
  301 TDVNFWRSPL LELSDEEEDD TNKSTSKSPK TPKNTKFGYQ EFEGIDEEDA QDYSPSPLIK 360
  361 SFNELMFEGE EDEEGEEDVE NAV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.24
Match:	2hlkA
Description:	No description for 2hlkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits