YRC Public Data Repository - Protein Structure Prediction

Protein:	gpt2
Organism:	Schizosaccharomyces pombe
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpt2.

Description	E-value	Query Range	Subject Range
gi\|32406234, gi\|... - gi\|32406234\|ref\|XP_323730.1\| hypothetical protein [Neurospora crassa], gi\|28918546\|gb\|EAA28218.1\| hy... gi\|85085211 - gi\|85085211\|ref\|XP_957454.1\| hypothetical protein [Neurospora crassa OR74A]	387.0	[0..14]	[446..999]
gi\|164429464, gi... - gi\|164429464\|ref\|XP_001728541.1\| hypothetical protein NCU10762 [Neurospora crassa OR74A], gi\|1570734... gi\|40882248 - gi\|40882248\|emb\|CAF06073.1\| probable UDP-N-acetylglucosamine:dolichyl phosphate N-acetylglucosamine-...	318.0	[0..14]	[446..30]
gi\|145020598, gi... - gi\|39951833\|ref\|XP_363633.1\| hypothetical protein MGG_01559 [Magnaporthe grisea 70-15], gb\|EAA55908....	313.0	[0..3]	[445..11]
gi\|114196509, gi... - gi\|115384540\|ref\|XP_001208817.1\| hypothetical protein ATEG_01452 [Aspergillus terreus NIH2624], gi\|1...	305.0	[0..3]	[445..13]
gi\|46136137, gi\|... - gi\|46136137\|ref\|XP_389760.1\| hypothetical protein FG09584.1 [Gibberella zeae PH-1], gi\|42554298\|gb\|E...	305.0	[0..3]	[445..13]
gi\|145231987 - gi\|145231987\|ref\|XP_001399460.1\| hypothetical protein An02g03240 [Aspergillus niger] gi\|18677129, gi\|... - gi\|18677129\|gb\|AAL78196.1\|AF126048_1 UDP-N-acetylglucosamine:dolichyl phosphate N-acetylglucosamine-...	304.0	[0..3]	[446..13]
gi\|151946629 - gi\|151946629\|gb\|EDN64851.1\| UDP-N-acetylglucosamine-1-P transferase [Saccharomyces cerevisiae YJM789... GPT_YEAST - UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Saccharomyces c... ALG7 - UDP-N-acetyl-glucosamine-1-P transferase, transfers Glc-Nac-P from UDP-GlcNac to Dol-P in the ER in ... gi\|190408607 - gi\|190408607\|gb\|EDV11872.1\| UDP-N-acetyl-glucosamine-1-P transferase [Saccharomyces cerevisiae RM11-... gi\|207347499 - gi\|207347499\|gb\|EDZ73650.1\| YBR243Cp-like protein [Saccharomyces cerevisiae AWRI1631]	299.0	[0..5]	[446..4]
gi\|83769827 - gi\|83769827\|dbj\|BAE59962.1\| unnamed protein product [Aspergillus oryzae] gi\|169774993 - gi\|169774993\|ref\|XP_001821964.1\| hypothetical protein [Aspergillus oryzae RIB40]	299.0	[0..3]	[445..10]
gi\|71001552, gi\|... - gi\|71001552\|ref\|XP_755457.1\| UDP-N-acetyl-glucosamine-1-P transferase Alg7 [Aspergillus fumigatus Af...	297.0	[0..3]	[445..13]
gi\|74354947 - gi\|74354947\|gb\|AAI02418.1\| Dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotr...	284.0	[0..22]	[442..7]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESCFNVGI WATGLALLMN QGQSPLLSNV GLSVLAYKAT AMFIPRVGPS FIKRGFSGKD  60
   61 MNKVEKYVIP ETMGAVSALV YFMCMIIFIP VLFYKYLVPN HNPNLPSDGS VAEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKSQFPHDLL GAYLSALLSI LSVSLLGILD DLFDIRWRHK FFLPAIAAIP LLVVYYVDYG  60
   61 VTYVSVPSIV RPFLKRSLIN LGFLYYFYMA AVAIFCPNSI NIIAGVNGVE AGQSLVLALV 120
  121 IACNDLFYVL SPKNKDALRA HLLSLYLVLP LIGVTAGLLK YNWWPSRVFV GDTFCYFAGM 180
  181 VMAVVGILGH FSKTLMLFFI PQIFNFAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.468521
Match:	PF00953.12
Description:	No description for PF00953.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [323-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVPQLFGLVE CPRHRLPKLN VKTGLLENSY TEFSLNEHPL PKKTLLTISI FEKLRLIRVE  60
   61 YDPSTGRPLR CTNFTIINFV LYHLGPMRED HLTICIMGLQ LLTGIFGLII RHFVAPLVYP 120
  121 EDNI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits