YRC Public Data Repository - Protein Structure Prediction

Protein:	prp19
Organism:	Schizosaccharomyces pombe
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp19.

Description	E-value	Query Range	Subject Range
gi\|23128312, gi\|... - gi\|23128312\|ref\|ZP_00110163.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668169...	315.0	[0..152]	[487..752]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	304.0	[0..152]	[487..269]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	301.0	[0..152]	[487..764]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	298.0	[0..103]	[487..1234]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	297.0	[0..71]	[487..897]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	292.0	[0..144]	[487..625]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	291.0	[0..153]	[487..827]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCSISGETP KEPVISRVSG NVYEKRLIEQ VIRETSKDPV TQQECTLEDL VPVKVPDFVR  60
   61 PRPPSATSLP ALLSLFQEEW DSVALEQFEL RRN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.68
Match:	1wgmA
Description:	Solution structure of the U-box in human ubiquitin conjugation factor E4A
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [94-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTETKQELST ALYSLDAALR VISRLTKERD EAREALAKFS DNIGTVSSKT IEVQEVEMGE  60
   61 SDDQLKTSLR STVEKTFQEL SSKRKRTKLQ PKWATDDAVS QLLQATPSTI LENLETESTT 120
  121 SFFPSPENSS FVLCLHKDEL LCLDIQSNST LKIFEGSALA CCWLTSSKIA VATADAISIF 180
  181 EFPVSSSGLQ SVGEPTSSIP IDEKVNFLQA HPSGEYLLAA SNEKCYIFSL KSQVYNITVA 240
  241 QHITSLAVHP DGNLFVAGLE NGELRFFETS SGNELTKFGP HSSPVKTLQF GENGYWLVVT 300
  301 TNDDSDIFIW DLRKSELVQK IPLQTKVAAV SLDITSQLLV SSDGETLYVH IYVKSSKSWR 360
  361 CMSQTHVSSI SNLVWLNELH QLLFSTSNGA ILRLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits