| Protein: | ctf1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 363 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ctf1.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..5] | [357..189] |
|
|
231.0 | [0..5] | [357..189] |
|
|
229.0 | [0..5] | [357..189] |
|
|
229.0 | [0..5] | [357..189] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MSMTAGNVVF VGNIPYDVSE QQMTEIFNQV GPVKTFKLVL DPETGSGKGY GFCEFFDSET 60
61 TAMAVRKLNN SELGPRKIRV EFPSNDPRR
|
| Detection Method: |  |
| Confidence: | 22.39794 |
| Match: | 1p1tA |
| Description: | NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| 3.4479220904723 | bayes_pls_golite062009 | |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| snRNA binding | 0.73428616955527 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [90-178] |
1 11 21 31 41 51
| | | | | |
1 NQSYEYTERT DRYMEQQNAH ESSYNSRFIP PVLHSTSSLP ASQGGGMPSP AIYSSSMATN 60
61 LNKNINSTSV PAYNFHNSMT SDFDSASQP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [179-363] |
1 11 21 31 41 51
| | | | | |
1 HTDAYNARTF QYNKSSQNKG DYTSGTSISN PTSIPLAPSV VQVLSTFSAQ ELLNMLSKLQ 60
61 TVVHIAPEEA RRLLIANPAL PYAAFQAMLL MNLVDANVLQ QVVVAVKNKN MHQPASATSS 120
121 PPSVPQKIPS SNHKSQQANG SDQGNEGKRM ALIQQLLALT PEQINALPPA QRDQILSIRR 180
181 QHFRQ
|
| Detection Method: | |
| Confidence: | 5.39794 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
