YRC Public Data Repository - Protein Structure Prediction

Protein:	cdt2
Organism:	Schizosaccharomyces pombe
Length:	490 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdt2.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	356.0	[0..6]	[489..1214]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	343.0	[0..9]	[489..1047]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	338.0	[0..9]	[489..909]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	337.0	[0..11]	[489..700]

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Predicted Domain #1

Region A:
Residues: [1-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMDIGKALS DVGGLRDITS RANNSLPPTP DSSPAAPSKK HKLYDFLESR GKIETPRKRI  60
   61 VFEKKPLLHK PVHIQKKPAQ LCKELLIRQL GGSRSHPFST KTSRHVGGRL NLETYYSRPS 120
  121 ECLMMLNQLP FCLGFANNES LLAVCTETGA LELFDSRFYD RQNEENQPSA RRIHGWLAHN 180
  181 NAIFSVNFSK DDSLLATSSG DQTSKVFDLS TQQCITRLGR RGVDGYHSHS VKQVNFCNDS 240
  241 PYNLVSCSRD GSIIFWDMRT HGITIDGEHF QKPVLRIRKA HENSGRDCSI TSATWLPQST 300
  301 SQVISSCSAN SALKLWDLRT VHTVRPLPAA TTPELTTSKR DFGVTNVCTS PDGERIYAAS 360
  361 RDSIIYEYSS RHLNSGFCKT YKDPRLRISS FYVKLACSPD GATLACGGGV QDKTSGVVVF 420
  421 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #2

Region A:
Residues: [422-490]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTRNCSSSAM LTGGHTKDVT AVDWSSEGQL ASISDDGSVR VWNSSLHGSA ANLREKNFSE  60
   61 IFYWGFSEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1nexB
Description:	Cdc4 F-box and linker domains; Cdc4 propeller domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits