| Protein: | alp13 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 337 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alp13.
| Description | E-value | Query Range |
Subject Range |
|
|
341.0 | [0..2] | [333..8] |
|
|
338.0 | [0..2] | [333..8] |
|
|
337.0 | [0..2] | [333..8] |
|
|
337.0 | [0..2] | [333..8] |
|
|
334.0 | [0..2] | [333..8] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MAVSYKVNER VLCFHGPLLY EAKIVDTEMK GDVTTYLIHY KGWKNSWDEW VEQDRILQWT 60
61 EENLKTQKEL KNAAI
|
| Detection Method: |  |
| Confidence: | 23.0 |
| Match: | 2efiA |
| Description: | No description for 2efiA was found. |
| Term | Confidence | Notes |
| transcription repressor activity | 4.08500855631983 | bayes_pls_golite062009 |
| chromatin binding | 3.84065302930105 | bayes_pls_golite062009 |
| transcription regulator activity | 3.64390820819794 | bayes_pls_golite062009 |
| methylated histone residue binding | 3.42338304360938 | bayes_pls_golite062009 |
| binding | 3.06758476214113 | bayes_pls_golite062009 |
| nucleic acid binding | 2.19167058827256 | bayes_pls_golite062009 |
| DNA binding | 2.05514577638135 | bayes_pls_golite062009 |
| histone binding | 2.00388175060339 | bayes_pls_golite062009 |
| protein binding | 1.61683263008775 | bayes_pls_golite062009 |
| satellite DNA binding | 1.4681464542396 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.998957812785999 | bayes_pls_golite062009 |
| general transcriptional repressor activity | 0.75184432495983 | bayes_pls_golite062009 |
| DNA helicase activity | 0.726970683178132 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.494788451379878 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.294457188332415 | bayes_pls_golite062009 |
| catalytic activity | 0.14067200158938 | bayes_pls_golite062009 |
| transcription activator activity | 0.136090220479238 | bayes_pls_golite062009 |
|
Region A: Residues: [76-165] |
1 11 21 31 41 51
| | | | | |
1 STRQKPTSKK SASSTSKHDS TGVKTSGKRS RESSTVTVDG DSHELPSRIK TQKSESPIPQ 60
61 QVKRDGTTDA KNEETTKPEN NEKDDFEEEP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [166-337] |
1 11 21 31 41 51
| | | | | |
1 PLPKHKISVP DVLKLWLVDD WENITKNQQL IAIPRNPTVR AAIAAFRESK ISHLNNEIDV 60
61 DVFEQAMAGL VIYFNKCLGN MLLYRFERQQ YLEIRQQYPD TEMCDLYGVE HLIRLFVSLP 120
121 ELIDRTNMDS QSIECLLNYI EEFLKYLVLH KDEYFIKEYQ NAPPNYRSLV GV
|
| Detection Method: | |
| Confidence: | 58.69897 |
| Match: | 2aqlA |
| Description: | Crystal Structure of the MRG15 MRG domain |
Matching Structure (courtesy of the PDB): |
|
