| Protein: | RunxB-PB |
| Organism: | Drosophila melanogaster |
| Length: | 306 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RunxB-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
366.0 | [0..53] | [303..2] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MHISAEVSST TSNQIQQQQQ QHQQQQQHQL LQHQQQQTAT TTTTKRRNAE SSASSNNNNN 60
61 NNTSTTNNNN TNNNNNSTTN NNNNNNNNNV KTKPVD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-306] |
1 11 21 31 41 51
| | | | | |
1 TSPYLTPENL IERTVDVLLA EHPGELVKTG SPHVVCTTLP THWRSNKTLP IAFKVLALGE 60
61 VMDGTIVTIR AGNDENFCGE LRNCTAVMKN QVAKFNDLRF VGRSGRGKSF TLTIVISTNP 120
121 IQIATYTKAI KVTVDGPREP RSKVRHQGFH PFAFGPQRFG PDPLMAGLPF KLPGKRKRWR 180
181 RFRGNQGFGR LKRKHRRHTE RNSGYSISLK
|
| Detection Method: | |
| Confidence: | 77.69897 |
| Match: | 1e50A |
| Description: | Acute myeloid leukemia 1 protein (AML1), RUNT domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.13591399970354 | bayes_pls_golite062009 |
| nucleic acid binding | 0.54158309583174 | bayes_pls_golite062009 |
| DNA binding | 0.53363287856737 | bayes_pls_golite062009 |
| transcription regulator activity | 0.3602964037518 | bayes_pls_golite062009 |
