| Protein: | B-H1-PA |
| Organism: | Drosophila melanogaster |
| Length: | 544 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for B-H1-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
169.0 | [0..5] | [542..37] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MKDSMSILTQ TPSEPNAAHP QLHHHLSTLQ QQHHQHHLHY GLQPPAVAHS IHSTTTMSSG 60
61 GSTTTASGIG KPNRSRFMIN DILAGSAAAA FYKQQQHHQQ LHHHNNNNNS GSSGGSSPAH 120
121 SNNNNN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [127-240] |
1 11 21 31 41 51
| | | | | |
1 INGDNCEASN VAGVGVLPSA LHHPQPHPPT HPHTHPHALM HPHGKLGHFP PTAGGNGLNV 60
61 AQYAAAMQQH YAAAAAAAAA RNNAAAAAAA AAAAAAAGVA APPVDGGVDG GVGL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [241-365] |
1 11 21 31 41 51
| | | | | |
1 APPAGGDLDD SSDYHEENED CDSGNMDDHS VCSNGGKDDD GNSVKSGSTS DMSGLSKKQR 60
61 KARTAFTDHQ LQTLEKSFER QKYLSVQERQ ELAHKLDLSD CQVKTWYQNR RTKWKRQTAV 120
121 GLELL
|
| Detection Method: | |
| Confidence: | 11.30103 |
| Match: | 1b72A |
| Description: | Homeobox protein hox-b1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.6809639302471 | bayes_pls_golite062009 |
| DNA binding | 2.45264254102339 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32767577674158 | bayes_pls_golite062009 |
| binding | 2.12643314274039 | bayes_pls_golite062009 |
| transcription factor activity | 1.9610710007594 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.71974400731667 | bayes_pls_golite062009 |
| protein binding | 0.57484570028668 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.328460252819506 | bayes_pls_golite062009 |
| transcription repressor activity | 0.245215140763955 | bayes_pls_golite062009 |
| transcription activator activity | 0.0177888191364471 | bayes_pls_golite062009 |
|
Region A: Residues: [366-544] |
1 11 21 31 41 51
| | | | | |
1 AEAGNFAAFQ RLYGGSPYLG AWPYAAAAGA AHGATPHTNI DIYYRQAAAA AAMQKPLPYN 60
61 LYAGVPSVGV GVGVGVGPAP FSHLSASSSL SSLSSYYQSA AAAASAANPG GPHPVAPPPS 120
121 VGGGSPPSGL VKPIPAHSAS ASPPPRPPST PSPTLNPGSP PGRSVDSCSQ SDDEDQIQV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
