| Protein: | Cap-PB |
| Organism: | Drosophila melanogaster |
| Length: | 1054 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cap-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..1] | [1007..1926] |
|
Region A: Residues: [1-340] |
1 11 21 31 41 51
| | | | | |
1 MATAADSYRL KLLREVAGTR VYDERKEESL NLLRETDSKV EKISEYLKTI EDRLQTLEEE 60
61 KEELKEYQKW DKTRRTLEYI RYETELKDTK KALDELQLQR KSSSDKKKIY NIEIQKAQEK 120
121 IKDVQKNLKE AKKKVQSTKE ERSVLMTEQQ QLLREKTKLD LTIVDLNDEV QGDNKSKERA 180
181 DQELKNLKVT IAEREKELDD VKPKYEAMKR KEEDCSRELQ LKEQKRKELY AKQGRGSQFS 240
241 SREDRDKWIT NELKSISKQT RDKIAHHAKL VEDLKKDATS EKDLGQKIEE HSSELEQLRL 300
301 QIDEHNKKYY ELKKTKDQHQ SMRNELWRKE TQMTQQLQTH
|
| Detection Method: |  |
| Confidence: | 17.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [341-548] |
1 11 21 31 41 51
| | | | | |
1 KEELSRADQA LRSMAGKPIL NGCDSVRKVL DSFVERGGQS AEIARAYYGP VIENFSCDKT 60
61 IYTAVEVTAA NRLFHHIVES EYEGTQILKE MNKLKLPGEV TFMPLNRLQV KIHDYPDDPD 120
121 SIPMISKLKY DEQHDKALRY IFGKTLICRN LERATELAKS TGLDCVTLDG DQVSSKGSLT 180
181 GGYFNTSRSR LEMQKKRTEY TSQIAEFE
|
| Detection Method: | |
| Confidence: | 4.72 |
| Match: | 1gxlA |
| Description: | Smc hinge domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.91859588671053 | bayes_pls_golite062009 |
| protein heterodimerization activity | 1.04211475755928 | bayes_pls_golite062009 |
| protein binding | 1.02696508439754 | bayes_pls_golite062009 |
| nucleic acid binding | 0.832846345187777 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.76561882762468 | bayes_pls_golite062009 |
| protein dimerization activity | 0.734314999998814 | bayes_pls_golite062009 |
| DNA binding | 0.693468729072494 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.489361130553895 | bayes_pls_golite062009 |
| DNA secondary structure binding | 0.370893450957454 | bayes_pls_golite062009 |
| catalytic activity | 0.265320175609019 | bayes_pls_golite062009 |
| ATP binding | 0.161090462621035 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.132019153736693 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.123699115804833 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.00495036379814584 | bayes_pls_golite062009 |
|
Region A: Residues: [549-878] |
1 11 21 31 41 51
| | | | | |
1 KKLSKLRNEL KSTENNINSI VSEMQKTETK QGKSKDVFEK VQGEIRLMKE ELVRIEQYRA 60
61 PKERSLAQCK ASLESMTSTK SSLEAELKQE LMSTLSSQDQ REIDQLNDDI RRLNQENKEA 120
121 FTQRMQFEVR KNKLDNLLIN NLFRRRDELI QALQEISVED RKRKLNNCKT ELVSAEKRIK 180
181 KVNSDLEEIE KRVMEAVQLQ KELQQELETH VRKEKEAEEN LNKDSKQLEK WSTKENMLNE 240
241 KIDECTEKIA SLGAVPLVDP SYTRMSLKNI FKELEKANQH LKKYNHVNKK ALDQFLSFSE 300
301 QKEKLYRRKE ELDIGDQKIH MLIQSLEMQK
|
| Detection Method: | |
| Confidence: | 2.49 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [879-1054] |
1 11 21 31 41 51
| | | | | |
1 VEAIQFTFRQ VAQNFTKVFK KLVPMGAGFL ILKTKDNEGD EMEKEVENSD AFTGIGIRVS 60
61 FTGVEAEMRE MNQLSGGQKS LVALALIFSI QKCDPAPFYL FDEIDQALDA MHRKAVANMI 120
121 HELSDTAQFI TTTFRPELLE NAHKFYGVRF RNKVSHIDCV TREEAKDFVE DDSTHA
|
| Detection Method: | |
| Confidence: | 22.30103 |
| Match: | 1xewY |
| Description: | Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases. |
Matching Structure (courtesy of the PDB): |
|
