YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL49-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL49-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|125980835, gi... - gi\|54642747\|gb\|EAL31492.1\| GA18327 [Drosophila pseudoobscura pseudoobscura], gi\|125980835\|ref\|XP_001... gi\|195173658, gi... - gi\|195173658\|ref\|XP_002027604.1\| GL22970 [Drosophila persimilis], gi\|194114529\|gb\|EDW36572.1\| GL2297... gi\|125980835\|ref... - GA18327-PA [Drosophila pseudoobscura], GA18327 [Drosophila pseudoobscura pseudoobscura]	228.0	[0..1]	[179..1]
gi\|40744301, gi\|... - gi\|67524897\|ref\|XP_660510.1\| hypothetical protein AN2906.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	210.0	[0..11]	[179..21]
gi\|55242058, gi\|... - gi\|58382840\|ref\|XP_312214.2\| ENSANGP00000010903 [Anopheles gambiae str. PEST], gi\|55242058\|gb\|EAA081... AGAP002713-PA - mitochondrial 39S ribosomal protein L49\|protein_coding\|2R:26054501:26055126:-1\|gene:AGAP002713	208.0	[0..17]	[178..26]
gi\|94469056, gi\|... - gi\|94469056\|gb\|ABF18377.1\| mitochondrial ribosomal protein L49 [Aedes aegypti], gi\|157134837\|ref\|XP_...	194.0	[0..25]	[178..33]
gi\|26340520 - gi\|26340520\|dbj\|BAC33922.1\| unnamed protein product [Mus musculus]	192.0	[0..27]	[179..14]
gi\|33086514, gi\|... - gi\|33086514\|gb\|AAP92569.1\| Aa2-277 [Rattus norvegicus], gi\|114145567\|ref\|NP_001041348.1\| mitochondri...	190.0	[0..51]	[179..38]
gi\|18447449 - gi\|18447449\|gb\|AAL68288.1\| RE35556p [Drosophila melanogaster]	189.0	[0..1]	[115..1]
MRPL49 - mitochondrial ribosomal protein L49	182.0	[0..46]	[179..35]
RM49_PONPY - Mitochondrial 39S ribosomal protein L49 - Pongo pygmaeus (Orangutan) RM49_PONAB - 39S ribosomal protein L49, mitochondrial OS=Pongo abelii GN=MRPL49 PE=2 SV=1	181.0	[0..46]	[179..35]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAKLMLG SGLCQKLSQL TRQIHMQPAL MSSFRSSREV QELDKYPEVE VVANPPEWRF  60
   61 VERLLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKTVPQPVEK PKYPSGWQPQ KEDGSELGYH VARTKNHMVP VYLHTRFRGQ RRITVVRRVQ  60
   61 GDIWTLEKDL RAVVEQSRNG KVCATRINEL SGQIHFHGDH VDVLRDYLKE KGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.603451326978983	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: