YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL49-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL49-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|125980835, gi... - gi\|54642747\|gb\|EAL31492.1\| GA18327 [Drosophila pseudoobscura pseudoobscura], gi\|125980835\|ref\|XP_001... gi\|195173658, gi... - gi\|195173658\|ref\|XP_002027604.1\| GL22970 [Drosophila persimilis], gi\|194114529\|gb\|EDW36572.1\| GL2297... gi\|125980835\|ref... - GA18327-PA [Drosophila pseudoobscura], GA18327 [Drosophila pseudoobscura pseudoobscura]	228.0	[0..1]	[179..1]
gi\|40744301, gi\|... - gi\|67524897\|ref\|XP_660510.1\| hypothetical protein AN2906.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	210.0	[0..11]	[179..21]
gi\|55242058, gi\|... - gi\|58382840\|ref\|XP_312214.2\| ENSANGP00000010903 [Anopheles gambiae str. PEST], gi\|55242058\|gb\|EAA081... AGAP002713-PA - mitochondrial 39S ribosomal protein L49\|protein_coding\|2R:26054501:26055126:-1\|gene:AGAP002713	208.0	[0..17]	[178..26]
gi\|94469056, gi\|... - gi\|94469056\|gb\|ABF18377.1\| mitochondrial ribosomal protein L49 [Aedes aegypti], gi\|157134837\|ref\|XP_...	194.0	[0..25]	[178..33]
gi\|26340520 - gi\|26340520\|dbj\|BAC33922.1\| unnamed protein product [Mus musculus]	192.0	[0..27]	[179..14]
gi\|33086514, gi\|... - gi\|33086514\|gb\|AAP92569.1\| Aa2-277 [Rattus norvegicus], gi\|114145567\|ref\|NP_001041348.1\| mitochondri...	190.0	[0..51]	[179..38]
gi\|18447449 - gi\|18447449\|gb\|AAL68288.1\| RE35556p [Drosophila melanogaster]	189.0	[0..1]	[115..1]
MRPL49 - mitochondrial ribosomal protein L49	182.0	[0..46]	[179..35]
RM49_PONPY - Mitochondrial 39S ribosomal protein L49 - Pongo pygmaeus (Orangutan) RM49_PONAB - 39S ribosomal protein L49, mitochondrial OS=Pongo abelii GN=MRPL49 PE=2 SV=1	181.0	[0..46]	[179..35]

Back

Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAKLMLG SGLCQKLSQL TRQIHMQPAL MSSFRSSREV QELDKYPEVE VVANPPEWRF  60
   61 VERLLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.601	a.77.1	DEATH domain
View	Download	0.429	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.411	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.400	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.353	a.77.1	DEATH domain

Predicted Domain #2

Region A:
Residues: [67-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKTVPQPVEK PKYPSGWQPQ KEDGSELGYH VARTKNHMVP VYLHTRFRGQ RRITVVRRVQ  60
   61 GDIWTLEKDL RAVVEQSRNG KVCATRINEL SGQIHFHGDH VDVLRDYLKE KGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.603451326978983	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: