| Protein: | sbr-PA |
| Organism: | Drosophila melanogaster |
| Length: | 672 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sbr-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
366.0 | [0..2] | [672..161] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MPKRGGGSSQ RYNNNVGNGG GRYNAPEDFD DFDVEDRQRR KDRNKRRVSF KPSQCLHNKK 60
61 DIKLRPEDLR RWDEDDDMSD MTTAVK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [87-159] |
1 11 21 31 41 51
| | | | | |
1 DRPTSRRRGS PIPRGKFGKL MPNSFGWYQV TLQNAQIYEK ETLLSALLAA MSPHVFIPQY 60
61 WRVERNCVIF FTD
|
| Detection Method: | |
| Confidence: | 38.221849 |
| Match: | 1kooA |
| Description: | mRNA export factor tap |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [160-497] |
1 11 21 31 41 51
| | | | | |
1 DYEAAERIQH LGKNGHLPDG YRLMPRVRSG IPLVAIDDAF KEKMKVTMAK RYNIQTKALD 60
61 LSRFHADPDL KQVFCPLFRQ NVMGAAIDIM CDNIPDLEAL NLNDNSISSM EAFKGVEKRL 120
121 PNLKILYLGD NKIPSLAHLV VLRNLSILEL VLKNNPCRSR YKDSQQFISE VRRKFPKLVK 180
181 LDGETLEPQI TFDLSEQGRL LETKASYLCD VAGAEVVRQF LDQYFRIFDS GNRQALLDAY 240
241 HEKAMLSISM PSASQAGRLN SFWKFNRNLR RLLNGEENRT RNLKYGRLAC VSTLDEWPKT 300
301 QHDRRTFTVD LTIYNTSMMV FTVTGLFKEL NDETNNPA
|
| Detection Method: | |
| Confidence: | 24.045757 |
| Match: | 2id5A |
| Description: | No description for 2id5A was found. |
|
Region A: Residues: [498-588] |
1 11 21 31 41 51
| | | | | |
1 SMELYDVRHF ARTYVVVPQN NGFCIRNETI FITNATHEQV REFKRSQHQP APGAMPSTSS 60
61 AVTSPQAGAA AGLQGRLNAL GVATGPVAIL S
|
| Detection Method: | |
| Confidence: | 29.221849 |
| Match: | 1jkgB |
| Description: | NTF2-like domain of Tip associating protein, TAP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [589-672] |
1 11 21 31 41 51
| | | | | |
1 GDPLAATAPV NSGSAAISTT AVAPGAQDES TKMQMIEAMS AQSQMNVIWS RKCLEETNWD 60
61 FNHAAFVFEK LFKENKIPPE AFMK
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 1go5A |
| Description: | FG-binding, C-terminal domain of TAP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.40395910522193 | bayes_pls_golite062009 |
| transcription regulator activity | 1.96100267092334 | bayes_pls_golite062009 |
| nucleic acid binding | 1.81460663777944 | bayes_pls_golite062009 |
| DNA binding | 1.67666753391185 | bayes_pls_golite062009 |
| small conjugating protein binding | 1.17371403847093 | bayes_pls_golite062009 |
| protein binding | 1.07513578953037 | bayes_pls_golite062009 |
| ubiquitin binding | 0.83381750627184 | bayes_pls_golite062009 |
| catalytic activity | 0.25774924710417 | bayes_pls_golite062009 |
