| Protein: | Rph-PA |
| Organism: | Drosophila melanogaster |
| Length: | 638 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rph-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
402.0 | [0..1] | [636..1] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MDFQNRNNTA NKFVCPSDRQ LALRAKLKAG WSSSKTSEPL RPEEQEAIIS VIRRNEEIEV 60
61 AERQRVGRLV ERVEKIKQHA VERGPNCCRL CGDTFGILRP QRILCEDCRQ SVCTKCSVDI 120
121 NIRYHTSERS REIWLCRICS ETREMWKKSG AWFFKGLPKY DMPRSASA
|
| Detection Method: |  |
| Confidence: | 29.522879 |
| Match: | 1zbdB |
| Description: | Effector domain of rabphilin-3a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.30634266891018 | bayes_pls_golite062009 |
| protein binding | 1.32366404206022 | bayes_pls_golite062009 |
| phosphoinositide binding | 1.14205751938857 | bayes_pls_golite062009 |
| phospholipid binding | 0.80395524110653 | bayes_pls_golite062009 |
| phosphatidylinositol binding | 0.41867699028241 | bayes_pls_golite062009 |
| transcription regulator activity | 0.252619815825555 | bayes_pls_golite062009 |
| DNA binding | 0.223827909774173 | bayes_pls_golite062009 |
| nucleic acid binding | 0.107173543930241 | bayes_pls_golite062009 |
| transporter activity | 0.0727830088566982 | bayes_pls_golite062009 |
| histone binding | 0.0177836520392798 | bayes_pls_golite062009 |
|
Region A: Residues: [169-337] |
1 11 21 31 41 51
| | | | | |
1 TPIPNPGPGS MAGDTRAVQS CHATPTRPAR VKKLTIRVND SSSSSSGHSE PEDEVDTGVG 60
61 IGVGVVGGGM AKGIASTRLQ REDSFRLRAY GSIRSFIDGG ERKLSNSFFF NRQQSQRPSE 120
121 CPEYDSVSMS KLRRESSFLR RGSVSSSWSI SDSSGSGSNN SGNSQTQSQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [338-638] |
1 11 21 31 41 51
| | | | | |
1 YQQHQQQLQQ HCRDPLLGWL EIAISYREAF HSLDCTMVRA RDLPAMDAAG LADPYCKLNI 60
61 ITPEAHTKYT RWQRTKTVHK TRNPEFNETL QFVGVEPEEL GNSLIYVALF DDDKYGHDFL 120
121 GAAKVCLSTV HSTSQYRISV PLGVEDQYSN AAEMAQNWPN GKMLLSLCYN TKRRALVVNV 180
181 KQCINLMAMD NNGSSDPFVK IQLKPDAHKN KKHKTSVKWR TLNPIYNEEF YFEASPHDLN 240
241 KEMLILTVWD KDLGKSNDFL GSLQLGAQSK GERLQQWLDC IRLPDHFHEK WHCLAPDNPA 300
301 H
|
| Detection Method: | |
| Confidence: | 62.0 |
| Match: | 1dqvA |
| Description: | Synaptogamin I |
Matching Structure (courtesy of the PDB): |
|
