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View Structure Prediction Details

Protein: l(1)G0232-PC
Organism: Drosophila melanogaster
Length: 797 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(1)G0232-PC.

Description E-value Query
Range
Subject
Range
l(1)G0232-PB - The gene lethal (1) G0232 is referred to in FlyBase by the symbol Dmel\l(1)G0232 (CG32697, FBgn00283...
553.0 [0..6] [797..11]

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Predicted Domain #1
Region A:
Residues: [1-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEQQEFAV KQFIDLCNNL GANCSTTTAT SPSTSSSSAS STQNLIAVVP PQLQQLQVQL  60
   61 PAPGGGGGAG AGGGGGGGGG AAPVRRHISH TTAVKFLYAR KFDIPRAVSL YEQHEQIRLK 120
  121 EYLYNIDPDV EPLRSELQTG KFTILPARTS SGAAIALFTA NRHSPLSVSH TTTLQGIVYQ 180
  181 LDSALQDSET QRAGLVFIYD MSGSKYSNFD YDLSQKILTL LKGGYPARLK KVLIVTAPLW 240
  241 FKAPFKILRL FVREKLRERV FTVSVPQLAL HVPRKALPIH LGGTLEVDHA TWLLSCRQSM 300
  301 TNREDELLAN IVGVGGGSGS GSAAGSAAIV STNGTETEAA TTAATIISAV HQLGDNNTTV 360
  361 VTVSNGVGPA GSASGGATTA ASAATEPNEN ITINGLSPSH RQAANNSSSS SSSAATVANP 420
  421 LKLNTSGSAD NNSTITNATT AAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.30103
Match: 1o6uA
Description: The Crystal Structure of Human Supernatant Protein Factor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.50711590439337 bayes_pls_golite062009
transporter activity 2.25865143268098 bayes_pls_golite062009
substrate-specific transporter activity 2.10462277559464 bayes_pls_golite062009
vitamin binding 2.0152397506122 bayes_pls_golite062009
retinal binding 1.93254744702904 bayes_pls_golite062009
retinoid binding 1.8165604084023 bayes_pls_golite062009
isoprenoid binding 1.75796060899596 bayes_pls_golite062009
transcription regulator activity 1.57333660473021 bayes_pls_golite062009
protein binding 1.43563365816744 bayes_pls_golite062009
transmembrane transporter activity 1.14391953556505 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.663226199389531 bayes_pls_golite062009
protein transporter activity 0.338272481166365 bayes_pls_golite062009
lipid transporter activity 0.292848105509111 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [444-797]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAGAAAGTTT NGGGEFWSEN PPSSASSGFS DDDSLAGQEG DPKPIDQIVQ MVKQRGRHGL  60
   61 IKEYADIRNR APEGTFLHAR MRANLTKNRY TDVLCYDHSR VVLAHEDGDE PSDYINANFV 120
  121 DGYKQKNAYI STQGPLPKTS QDFWRMIWEQ HCLVIVMTTR VMERGRVKCG QYWEPTEESS 180
  181 LEFGDYHVRT ISVECNEDYM VASLELRNIK TDEIRNVSHW QFTSWPDYGV PSSAMAMLNF 240
  241 LQKVREKQAQ LVQGLGDTWA GHPRGPPIVV HCSAGIGRTG TFITLDICIS RLEDVGTADI 300
  301 RGTVEKIRSQ RAYSIQMPDQ YVFCHLALIE YAYSRGMLQT VDLAGFDERE PDSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.221849
Match: 2pa5A
Description: No description for 2pa5A was found.

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