YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311766, dhd-PA
Organism:	Drosophila melanogaster
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311766, dhd-PA.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	134.0	[0..2]	[105..43]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	133.0	[0..2]	[105..43]
gi\|114626146 - gi\|114626146\|ref\|XP_001142154.1\| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surfa...	131.0	[0..1]	[105..220]
gi\|160872103, gi... - gi\|94494048\|ref\|ZP_01301251.1\| hypothetical protein Rgryl_01000578 [Rickettsiella grylli], gi\|160872...	130.0	[0..2]	[105..6]
gi\|52006025, gi\|... - gi\|74316537\|ref\|YP_314277.1\| thioredoxin [Thiobacillus denitrificans ATCC 25259], gi\|74056032\|gb\|AAZ...	130.0	[0..7]	[107..10]
gi\|148654106, gi... - gi\|91770948\|ref\|ZP_01272767.1\| Thioredoxin [Psychrobacter sp. PRwf-1], gi\|91719962\|gb\|EAS85892.1\| Th...	130.0	[0..6]	[105..9]
gi\|121608517, gi... - gi\|121608517\|ref\|YP_996324.1\| thioredoxin [Verminephrobacter eiseniae EF01-2], gi\|121553157\|gb\|ABM57...	130.0	[0..1]	[107..1]
gi\|116057647 - gi\|116057647\|emb\|CAL53850.1\| Thioredoxin (ISS) [Ostreococcus tauri]	129.0	[0..3]	[105..114]
gi\|83776783 - gi\|83776783\|gb\|ABC46707.1\| chloroplast thioredoxin M-type [Arachis hypogaea]	128.0	[0..2]	[105..77]
gi\|53801490 - gi\|53801490\|gb\|AAU93947.1\| thioredoxin H [Helicosporidium sp. ex Simulium jonesii]	128.0	[0..1]	[107..5]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVRTMNDY HKRIEAADDK LIVLDFYATW CGPCKEMEST VKSLARKYSS KAVVLKIDVD  60
   61 KFEELTERYK VRSMPTFVFL RQNRRLASFA GADEHKLTNM MAKLVKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1quwA
Description:	Thioredoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.8464796631544	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.23310780102446	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
transcription regulator activity	0.96297634785608	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
hydrolase activity	0.620302638089385	bayes_pls_golite062009
glutathione binding	0.2456976890622	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009
protein disulfide oxidoreductase activity	0.0719543694089202	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: