| Protein: | snf-PA |
| Organism: | Drosophila melanogaster |
| Length: | 216 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snf-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
150.0 | [0..1] | [216..36] |
|
|
146.0 | [0..2] | [216..5] |
|
|
145.0 | [0..1] | [216..1] |
|
|
143.0 | [0..1] | [216..10] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MEMLPNQTIY INNLNEKIKK EELKKSLYAI FSQFGQILDI VALKTLKMRG QAFVIFKEIG 60
61 SASNALRTMQ GFPFYDKPMQ IAYSKSDSDI VAKIKGTFKE RPKKVKPPKP APGTDEKKDK 120
121 KKKPSSAEN
|
| Detection Method: |  |
| Confidence: | 19.154902 |
| Match: | 1fhtA |
| Description: | RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [130-216] |
1 11 21 31 41 51
| | | | | |
1 SNPNAQTEQP PNQILFLTNL PEETNEMMLS MLFNQFPGFK EVRLVPNRHD IAFVEFTTEL 60
61 QSNAAKEALQ GFKITPTHAM KITFAKK
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 2u1aA |
| Description: | RNA BINDING DOMAIN 2 OF HUMAN U1A PROTEIN, NMR, 20 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
