YRC Public Data Repository - Protein Structure Prediction

Protein:	ctp-PB, ctp-PC, ...
Organism:	Drosophila melanogaster
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ctp-PB, ctp-PC, ....

Description	E-value	Query Range	Subject Range
gi\|76642713 - gi\|76642713\|ref\|XP_593596.2\| PREDICTED: similar to dynein light chain-2 [Bos taurus]	183.0	[0..1]	[89..152]
gi\|50758408 - gi\|50758408\|ref\|XP_415908.1\| PREDICTED: similar to dynein light chain-2 [Gallus gallus]	183.0	[0..1]	[89..434]
gi\|112418924 - gi\|112418924\|gb\|AAI22095.1\| Dnl2 protein [Danio rerio]	163.0	[0..1]	[89..37]
gi\|47168753, gi\|... - gi\|47168753\|pdb\|1RE6\|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic...	163.0	[0..1]	[89..6]
gi\|72044059, gi\|... - gi\|72046933\|ref\|XP_785110.1\| PREDICTED: similar to dynein light chain-2 [Strongylocentrotus purpurat... DYL1_ANTCR - Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1 DYL1_HELCR - Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1	162.0	[0..1]	[89..1]
Cdlc2-PA, Cdlc2-... - The gene Cytoplasmic dynein light chain 2 is referred to in FlyBase by the symbol Dmel\Cdlc2 (CG5450... gi\|110758819 - gi\|110758819\|ref\|XP_001120015.1\| PREDICTED: similar to Dynein light chain 2, cytoplasmic (8 kDa dyne... gi\|220956998, gi... - gi\|220956998\|gb\|ACL91042.1\| Cdlc2-PA [synthetic construct], gi\|220947638\|gb\|ACL86362.1\| Cdlc2-PA [sy... gi\|194189755, gi... - gi\|195575763\|ref\|XP_002077746.1\| GD23096 [Drosophila simulans], gi\|194189755\|gb\|EDX03331.1\| GD23096 ... gi\|194854064, gi... - gi\|194854064\|ref\|XP_001968279.1\| GG24789 [Drosophila erecta], gi\|194854054\|ref\|XP_001968277.1\| GG246... gi\|195470479, gi... - gi\|195470479\|ref\|XP_002087534.1\| GE17560 [Drosophila yakuba], gi\|194173635\|gb\|EDW87246.1\| GE17560 [D... gi\|194123467, gi... - gi\|195350331\|ref\|XP_002041694.1\| GM16816 [Drosophila sechellia], gi\|194123467\|gb\|EDW45510.1\| GM16816...	160.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRKAVIKN ADMSEEMQQD AVDCATQALE KYNIEKDIAA YIKKEFDKKY NPTWHCIVGR  60
   61 NFGSYVTHET RHFIYFYLGQ VAILLFKSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1re6A
Description:	Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
microtubule motor activity	9.69298846835381	bayes_pls_golite062009
motor activity	5.85494716006373	bayes_pls_golite062009
dynein intermediate chain binding	4.30226487277718	bayes_pls_golite062009
nitric-oxide synthase regulator activity	3.06572632418145	bayes_pls_golite062009
dynein binding	2.90318309608701	bayes_pls_golite062009
cytoskeletal protein binding	2.8232927372914	bayes_pls_golite062009
binding	2.04793419379986	bayes_pls_golite062009
protein binding	1.75479345161448	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.47503021587966	bayes_pls_golite062009
pyrophosphatase activity	1.40860884968216	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.39154744890125	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.38919307572739	bayes_pls_golite062009
ATPase activity, coupled	1.20571334292956	bayes_pls_golite062009
ATPase activity	0.96367371812709	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009
hydrolase activity	0.442050017414837	bayes_pls_golite062009
protein dimerization activity	0.257276734446829	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: