YRC Public Data Repository - Protein Structure Prediction

Protein:	CG12498-PA
Organism:	Drosophila melanogaster
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG12498-PA.

Description	E-value	Query Range	Subject Range
RTF1_SCHPO - RNA polymerase-associated protein C651.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... SPBC651.09c - RNA polymerase II associated Paf1 complex	200.0	[0..4]	[226..157]
gi\|50748171 - gi\|50748171\|ref\|XP_421139.1\| PREDICTED: similar to KIAA0252 [Gallus gallus]	198.0	[0..45]	[239..538]
gi\|74187158 - gi\|74187158\|dbj\|BAE22595.1\| unnamed protein product [Mus musculus]	196.0	[0..45]	[239..41]
gi\|67536800, gi\|... - gi\|67536800\|ref\|XP_662174.1\| hypothetical protein AN4570.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	194.0	[0..4]	[196..218]
Y5843_ARATH - Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2	189.0	[0..31]	[228..130]
gi\|110591171, gi... - gi\|159164068\|pdb\|2DB9\|A Chain A, Solution Structure Of The Plus-3 Domain Of Human Kiaa0252 Protein, ...	186.0	[0..45]	[180..8]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQRSRHVR RPAAEIVREL RNLRASPLRI DDENESWVNG YEKPPTPDLP VTSRDQLELL  60
   61 RLSRHRIGLL LVRPAFEQAV TGCFVRVNVS GQGELPDHRI AEVLGICELD FGYKVEQIPT 120
  121 NVALRLRYDD LEMQHEINDV SNLNFTQEEF ELWRDNCVNQ AISPPTTHIL TRKKVELYNA 180
  181 LQLEAKPLSL IQRTFSFALR PQQKIGIMER HGVVYPWQLN HSLPFVSQSP TENPSRGKAD 240
  241 TVDEEEDPGA AAPLLPKTEP N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	2bzeA
Description:	No description for 2bzeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits