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Protein Overview: Y5843_ARATH

General Information:
Name(s) found: Y5843_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 553 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: histone modification [IEA]
    transcription initiation [IEA]
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDITWVEEG NGSATSSRKR KARPKRFEFV GWGSRQLIEF LHSLGKDTSE MISRYDVSDT  60
   61 IAKYISKEGL LDPSNKKKVV CDKRLVLLFG TRTIFRMKVY DLLEKHYKEN QDDSDFDFLY 120
  121 EDEPQIICHS EKIAKRTSKV VKKPRGTFAA IVSDNIKLLY LRKSLVQELL KSPDTFEGKM 180
  181 LGSFVRIKSD PNDYLQKYPY QLVQVTGVKK EHGTDDFLLQ VTNYVKDVSI SVLSDDNFSQ 240
  241 EECEDLHQRI KNGLLKKPTI VEMEEKAKKL HKDQTKHWLG REIELLKRLI DRANEKGWRR 300
  301 ELSEYLDKRE LLQNPDEQAR LLREVPEVIG EELVQNPEVS SPEAHKSDNE QRLSESPLSC 360
  361 IHETPEARNL FGGEDQQFNN GYVMSNPITT PGITSCATEI NKGLPTWIAS AGAEYLHVDV 420
  421 EQPANGIIGG ETPTEESKVS QLQSSIPVNN VDNGSQVQPN PSEVIELSDD DEDDNGDGET 480
  481 LDPKVEDVRV LSYDKEKLNW LYKDPQGLVQ GPFSLTQLKA WSDAEYFTKQ FRVWMTGESM 540
  541 ESAVLLTDVL RLV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 23.30103 Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana
    2 View Details [112..296] FFAS03 4.95 No description for 2bzeA was found.
    3 View Details [297..443] MSA 8.137997 View MSA. No confident structure predictions are available.
    4 View Details [444..553] PSI-BLAST 19.0 Solution structure of the GYF domain of a hypothetical protein from Arabidopsis thaliana


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle