YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FBpp0298002, elav-PA
Organism: Drosophila melanogaster
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0298002, elav-PA.

Description E-value Query
Range		 Subject
Range
gi|73977001 - gi|73977001|ref|XP_860207.1| PREDICTED: similar to ELAV (embryonic lethal, abnormal vision, Drosophi...
 274.0 [0..109] [481..6]

Back

Predicted Domain #1
Region A:
Residues: [1-142] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFIMANTGA GGGVDTQAQL MQSAAAAAAV AATNAAAAPV QNAAAVAAAA QLQQQQVQQA  60
   61 ILQVQQQQTQ QAVAAAAAAV TQQLQQQQQA VVAQQAVVQQ QQQQAAAVVQ QAAVQQAVVP 120
  121 QPQQAQPNTN GNAGSGSQNG SN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.42
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [143-238] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSTETRTNLI VNYLPQTMTE DEIRSLFSSV GEIESVKLIR DKSQVYIDPL NPQAPSKGQS  60
   61 LGYGFVNYVR PQDAEQAVNV LNGLRLQNKT IKVSFA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1fxlA
Description: Hu antigen D (Hud)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 5.15097136329571 bayes_pls_golite062009
nucleic acid binding 4.92126426323641 bayes_pls_golite062009
mRNA binding 4.05281507540116 bayes_pls_golite062009
binding 3.64400841800969 bayes_pls_golite062009
2.60920363363072 bayes_pls_golite062009
transcription regulator activity 2.18211199677674 bayes_pls_golite062009
DNA binding 1.98418556946403 bayes_pls_golite062009
single-stranded RNA binding 1.46469774223879 bayes_pls_golite062009
poly-pyrimidine tract binding 1.36691748240059 bayes_pls_golite062009
protein binding 1.12215421354121 bayes_pls_golite062009
transcription factor activity 1.07843408116687 bayes_pls_golite062009
mRNA 3'-UTR binding 0.824614388276642 bayes_pls_golite062009
sequence-specific DNA binding 0.383589644462932 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [239-383] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPSSDAIKGA NLYVSGLPKT MTQQELEAIF APFGAIITSR ILQNAGNDTQ TKGVGFIRFD  60
   61 KREEATRAII ALNGTTPSSC TDPIVVKFSN TPGSTSKIIQ PQLPAFLNPQ LVRRIGGAMH 120
  121 TPVNKGLARF SPMAGDMLDV MLPNG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.13
Match: 1h2tZ
Description: CBP20, 20KDa nuclear cap-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 4.74219150342477 bayes_pls_golite062009
nucleic acid binding 4.65259034341669 bayes_pls_golite062009
mRNA binding 3.63162433534903 bayes_pls_golite062009
binding 3.48033873254013 bayes_pls_golite062009
2.38034004712143 bayes_pls_golite062009
transcription regulator activity 2.2045206027152 bayes_pls_golite062009
DNA binding 1.99030664201171 bayes_pls_golite062009
transcription factor activity 1.09958329302628 bayes_pls_golite062009
single-stranded RNA binding 1.08300488237934 bayes_pls_golite062009
protein binding 1.05805521997665 bayes_pls_golite062009
poly-pyrimidine tract binding 0.960399311787502 bayes_pls_golite062009
mRNA 3'-UTR binding 0.462558743683805 bayes_pls_golite062009
sequence-specific DNA binding 0.327072171076297 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [384-483] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGAAAAAATT LASGPGGAYP IFIYNLAPET EEAALWQLFG PFGAVQSVKI VKDPTTNQCK  60
   61 GYGFVSMTNY DEAAMAIRAL NGYTMGNRVL QVSFKTNKAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1d8zA
Description: Hu antigen C (Huc)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 5.15097136329571 bayes_pls_golite062009
nucleic acid binding 4.92126426323641 bayes_pls_golite062009
mRNA binding 4.05281507540116 bayes_pls_golite062009
binding 3.64400841800969 bayes_pls_golite062009
2.60920363363072 bayes_pls_golite062009
transcription regulator activity 2.18211199677674 bayes_pls_golite062009
DNA binding 1.98418556946403 bayes_pls_golite062009
single-stranded RNA binding 1.46469774223879 bayes_pls_golite062009
poly-pyrimidine tract binding 1.36691748240059 bayes_pls_golite062009
protein binding 1.12215421354121 bayes_pls_golite062009
transcription factor activity 1.07843408116687 bayes_pls_golite062009
mRNA 3'-UTR binding 0.824614388276642 bayes_pls_golite062009
sequence-specific DNA binding 0.383589644462932 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle