| Protein: | heph-PC, heph-PS... |
| Organism: | Drosophila melanogaster |
| Length: | 581 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for heph-PC, heph-PS....
| Description | E-value | Query Range |
Subject Range |
|
|
303.0 | [0..2] | [581..391] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MRGSDELLSQ AAVMAPASDN NNQDLATKKA KLEPGTVLAG GIAKASKVIH LRNIPNESGE 60
61 ADVIALGIPF GRVTNVLVLK GKNQAFIEMA DEISATSMVS CYTVTPPQMR GRMVYVQFSN 120
121 HRELKTDQGH NNSTAHSDY
|
| Detection Method: |  |
| Confidence: | 16.0 |
| Match: | 2ad9A |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD1 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
|
Region A: Residues: [140-379] |
1 11 21 31 41 51
| | | | | |
1 SVQSPASGSP LPLSAAANAT SNNANSSSDS NSAMGILQNT SAVNAGGNTN AAGGPNTVLR 60
61 VIVESLMYPV SLDILHQIFQ RYGKVLKIVT FTKNNSFQAL IQYPDANSAQ HAKSLLDGQN 120
121 IYNGCCTLRI DNSKLTALNV KYNNDKSRDF TNPALPPGEP GVDIMPTAGG LMNTNDLLLI 180
181 AARQRPSLSG DKIVNGLGAP GVLPPFALGL GTPLTGGYNN ALPNLAAFSL ANSGALQTTA 240
241
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 2adbA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD2 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [380-581] |
1 11 21 31 41 51
| | | | | |
1 PAMRGYSNVL LVSNLNEEMV TPDALFTLFG VYGDVQRVKI LYNKKDSALI QMAEPQQAYL 60
61 AMSHLDKLRL WGKPIRVMAS KHQAVQLPKE GQPDAGLTRD YSQNPLHRFK KPGSKNYQNI 120
121 YPPSATLHLS NIPSSCSEDD IKEAFTSNSF EVKAFKFFPK DRKMALLQLL SVEEAVLALI 180
181 KMHNHQLSES NHLRVSFSKS NI
|
| Detection Method: | |
| Confidence: | 39.522879 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
