| Protein: | heph-PO, heph-PH... |
| Organism: | Drosophila melanogaster |
| Length: | 789 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for heph-PO, heph-PH....
| Description | E-value | Query Range |
Subject Range |
|
|
371.0 | [0..2] | [789..199] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MMSCPIPMPM PISSLHKSEF EPVNIGVKQM QLLHAPASTH PHPHPHQHPQ HSAASAAAYQ 60
61 AMQVHQQQHQ QQQQAAVFHH QVAAIAAQQQ QQQQQAQVQH QQQMQQQFHY QAQAQAQAQA 120
121 MLQTYMQLQV NSAVGVSTAP ATPTKPVAAQ IPGAISGPIA GPVPVSVPTQ FF
|
| Detection Method: |  |
| Confidence: | 3.154902 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [173-234] |
1 11 21 31 41 51
| | | | | |
1 TAPSTPLTII PAAAVASSAM FATAATPTSA ATTPTNNRGS DELLSQAAVM APASDNNNQD 60
61 LA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [235-348] |
1 11 21 31 41 51
| | | | | |
1 TKKAKLEPGT VLAGGIAKAS KVIHLRNIPN ESGEADVIAL GIPFGRVTNV LVLKGKNQAF 60
61 IEMADEISAT SMVSCYTVTP PQMRGRMVYV QFSNHRELKT DQGHNNSTAH SDYS
|
| Detection Method: | |
| Confidence: | 15.30103 |
| Match: | 2ad9A |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD1 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.83802439076672 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 1.69629099229571 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| snRNA binding | 0.249682711188639 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [349-572] |
1 11 21 31 41 51
| | | | | |
1 VQSPASGSPL PLSAAANATS NNANSSSDSN SAMGILQNTS AVNAGGNTNA AGGPNTVLRV 60
61 IVESLMYPVS LDILHQIFQR YGKVLKIVTF TKNNSFQALI QYPDANSAQH AKSLLDGQNI 120
121 YNGCCTLRID NSKLTALNVK YNNDKSRDFT NPALPPGEPG VDIMPTAGGL MNTNDLLLIA 180
181 ARQRPSLSGD KIVNGLGAPG VLPPFALGLG TPLTGGYNNA LPNL
|
| Detection Method: | |
| Confidence: | 17.30103 |
| Match: | 2adbA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD2 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [573-789] |
1 11 21 31 41 51
| | | | | |
1 AAFSLANSGA LQTTAPAMRG YSNVLLVSNL NEEMVTPDAL FTLFGVYGDV QRVKILYNKK 60
61 DSALIQMAEP QQAYLAMSHL DKLRLWGKPI RVMASKHQAV QLPKEGQPDA GLTRDYSQNP 120
121 LHRFKKPGSK NYQNIYPPSA TLHLSNIPSS CSEDDIKEAF TSNSFEVKAF KFFPKDRKMA 180
181 LLQLLSVEEA VLALIKMHNH QLSESNHLRV SFSKSNI
|
| Detection Method: | |
| Confidence: | 44.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| 2.83802439076672 | bayes_pls_golite062009 | |
| poly-pyrimidine tract binding | 1.69629099229571 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| snRNA binding | 0.249682711188639 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
