| Protein: | TfIIA-L-PA |
| Organism: | Drosophila melanogaster |
| Length: | 366 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TfIIA-L-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
267.0 | [0..1] | [366..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MALCQTSVLK VYHAVIEDVI TNVRDAFLDE GVDEQVLQEM KQVWRNKLLA SKAVELSPDS 60
61 GDGSHPPPIV ANNPKSHKAA NAKAKKAAAA TAVTSHQHIG GNSSMSSLVG LKSSAGMAAG 120
121 SGIRNGLVPI KQEVNSQNPP
|
| Detection Method: |  |
| Confidence: | 4.53 |
| Match: | 1rm1C |
| Description: | Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [141-281] |
1 11 21 31 41 51
| | | | | |
1 PLHPTSAASM MQKQQQAASS GQGSIPIVAT LDPNRIMPVN ITLPSPAGSA SSESRVLTIQ 60
61 VPASALQENQ LTQILTAHLI SSIMSLPTTL ASSVLQQHVN AALSSANHQK TLAAAKQLDG 120
121 ALDSSDEDES EESDDNIDND D
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [282-366] |
1 11 21 31 41 51
| | | | | |
1 DDDLDKDDDE DAEHEDAAEE EPLNSEDDVT DEDSAEMFDT DNVIVCQYDK ITRSRNKWKF 60
61 YLKDGIMNMR GKDYVFQKSN GDAEW
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 1nvpC |
| Description: | HUMAN TFIIA/TBP/DNA COMPLEX |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 10.9702263885595 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 5.06993130505706 | bayes_pls_golite062009 |
| transcription regulator activity | 4.7915315980149 | bayes_pls_golite062009 |
| nucleic acid binding | 2.26583234267697 | bayes_pls_golite062009 |
| DNA binding | 2.12151270115091 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.10703866415858 | bayes_pls_golite062009 |
| binding | 1.9212205923594 | bayes_pls_golite062009 |
| transcription activator activity | 1.42377454899217 | bayes_pls_golite062009 |
| transcription factor binding | 1.31659763916181 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.15899255380593 | bayes_pls_golite062009 |
| protein binding | 0.497114544861103 | bayes_pls_golite062009 |
