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View Structure Prediction Details

Protein: grass-PB
Organism: Drosophila melanogaster
Length: 377 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grass-PB.

Description E-value Query
Range
Subject
Range
gi|21464468 - gi|21464468|gb|AAM52037.1| RH61984p [Drosophila melanogaster]
302.0 [0..1] [377..32]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIASSLAVL YGIAIVSSMG VQSARADYAD DCTTPDGDQG QCMPFSSCRT IEERLTEAQK  60
   61 AGQKVPADYA SYLQKALCGE FNGVRHFCCP SANIQHNSKV MSLFKDENFD CGNFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 2dohX
Description: No description for 2dohX was found.

Predicted functions:

Term Confidence Notes
receptor activity 2.70083456904638 bayes_pls_golite062009
signal transducer activity 2.07627148653165 bayes_pls_golite062009
molecular transducer activity 2.07627148653165 bayes_pls_golite062009
binding 1.90408871052739 bayes_pls_golite062009
hydrolase activity 1.84706864202908 bayes_pls_golite062009
peptidase activity 1.80645788247419 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 1.56029095187292 bayes_pls_golite062009
protein binding 1.52504676895038 bayes_pls_golite062009
endopeptidase activity 1.33798168430886 bayes_pls_golite062009
catalytic activity 0.280235123429996 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [116-377]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQRVSNGYEV KLSSRPWMAL LRYQQFGESR FLCGGAMISE RYILTAAHCV HGLQNDLYEI  60
   61 RLGEHRISTE EDCRQQGRKK KCAPPVVNVG IEKHLIHEKY DARHIMHDIA LLKLNRSVPF 120
  121 QKHIKPICLP ITDELKEKAE QISTYFVTGW GTTENGSSSD VLLQANVPLQ PRSACSQAYR 180
  181 RAVPLSQLCV GGGDLQDSCK GDSGGPLQAP AQYLGEYAPK MVEFGIVSQG VVTCGQISLP 240
  241 GLYTNVGEYV QWITDTMASN GL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 2olgA
Description: No description for 2olgA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle