| Protein: | msi-PA |
| Organism: | Drosophila melanogaster |
| Length: | 606 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for msi-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
441.0 | [0..28] | [592..4] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MHALQEGATV LHHQQPPPPT SGEDHLLTAD SFFYARSNPM ENAAAAAAAA AAGLIDPHHN 60
61 RDLHQALVAS IANNSVAAIG GGLTTAAVLK SAAQQSQQAV QQNQNAVVVT PGLEQPKQEP 120
121 AQQAALALLK ENVNASAGAG QNNGQAAMGG SNKSGSSGRS TPSLSGGSGS DPAPGKLFVG 180
181 GLSWQTSSDK LKEYFNMFGT VTDVLIMKDP VTQRSRGFGF ITFQEPCTVE KVLKVPIHTL 240
241 DGKKIDPKHA TPKNRPRQA
|
| Detection Method: |  |
| Confidence: | 49.39794 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| nucleic acid binding | 2.9003829560934 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| binding | 2.30438455421982 | bayes_pls_golite062009 |
| 0.61507045441317 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| protein binding | 0.403675976995418 | bayes_pls_golite062009 |
| transcription regulator activity | 0.214300208089751 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.18283446592068 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.0860748299027598 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.0800614106161897 | bayes_pls_golite062009 |
|
Region A: Residues: [260-358] |
1 11 21 31 41 51
| | | | | |
1 NKTKKIFVGG VSQDTSAEEV KAYFSQFGPV EETVMLMDQQ TKRHRGFGFV TFENEDVVDR 60
61 VCEIHFHTIK NKKVECKKAQ PKEAVTPAAQ LLQKRIMLG
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2go9A |
| Description: | No description for 2go9A was found. |
|
Region A: Residues: [359-516] |
1 11 21 31 41 51
| | | | | |
1 TLGVQLPTAP GQLIGARGAG VATMNPLAML QNPTQLLQSP AAAAAAQQAA LISQNPFQVQ 60
61 NAAAAASIAN QAGFGKLLTT YPQTALHSVR YAPYSIPASA ATANAALMQA HQAQSVAAAA 120
121 HHHQQQQQQQ HHHQQQTHNA HVAAAQQQQQ SHHNAVSN
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [517-606] |
1 11 21 31 41 51
| | | | | |
1 PASQAHSAAA AAALAANAAN GAGAAGAHSL AAAAQQAGLM AGNPLNAAAA AAAAAANPAA 60
61 AYSNYALANV DMSSFQGVDW STMYGMGMYV
|
| Detection Method: | |
| Confidence: | 23.0 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
