YRC Public Data Repository - Protein Structure Prediction

Protein:	cav-PE
Organism:	Drosophila melanogaster
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cav-PE.

Description	E-value	Query Range	Subject Range
gi\|220942966, gi... - gi\|220953172\|gb\|ACL89129.1\| cav-PA [synthetic construct], gi\|220942966\|gb\|ACL84026.1\| cav-PA [synthe... cav-PA - The gene caravaggio is referred to in FlyBase by the symbol Dmel\cav (CG6219, FBgn0026257). It is a ...	703.0	[0..5]	[343..7]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKEVNMSGT QMSAFLRKYL ADEDKKIRAQ FKESDPNNKL ILWMHEKTRI TEEDLARPYT  60
   61 EDEVKELCLR TKVKVDMTAW NCLWEAKKRF EAKGRFVNKS ERFINRMYMK AVRRKMVQPY 120
  121 PEEFVAQRRE IVAAETKKQN ISRLDRWQKK KSQNLSAPES SPDAHASSND AVQSHEDQAN 180
  181 TNLSSLSQMN FQVEAMAPPG VSSSDLSGIG DDEDEQQQSG FQDENINRPE TEINENS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [238-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRCDPINLGR MRTGCINSQA NNSFRNTESD PDYYMFGTQL STLVRPTSTQ EPDDQVNCPE  60
   61 TEMNESWVRC DQINSESLSI GPSIDSEGTI TFQNTESEPI DVTSIA