YRC Public Data Repository - Protein Structure Prediction

Protein:	cav-PE
Organism:	Drosophila melanogaster
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cav-PE.

Description	E-value	Query Range	Subject Range
gi\|220942966, gi... - gi\|220953172\|gb\|ACL89129.1\| cav-PA [synthetic construct], gi\|220942966\|gb\|ACL84026.1\| cav-PA [synthe... cav-PA - The gene caravaggio is referred to in FlyBase by the symbol Dmel\cav (CG6219, FBgn0026257). It is a ...	703.0	[0..5]	[343..7]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKEVNMSGT QMSAFLRKYL ADEDKKIRAQ FKESDPNNKL ILWMHEKTRI TEEDLARPYT  60
   61 EDEVKELCLR TKVKVDMTAW NCLWEAKKRF EAKGRFVNKS ERFINRMYMK AVRRKMVQPY 120
  121 PEEFVAQRRE IVAAETKKQN ISRLDRWQKK KSQNLSAPES SPDAHASSND AVQSHEDQAN 180
  181 TNLSSLSQMN FQVEAMAPPG VSSSDLSGIG DDEDEQQQSG FQDENINRPE TEINENS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [238-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRCDPINLGR MRTGCINSQA NNSFRNTESD PDYYMFGTQL STLVRPTSTQ EPDDQVNCPE  60
   61 TEMNESWVRC DQINSESLSI GPSIDSEGTI TFQNTESEPI DVTSIA