| Protein: | Rox8-PC, Rox8-PB |
| Organism: | Drosophila melanogaster |
| Length: | 464 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rox8-PC, Rox8-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
313.0 | [0..8] | [463..100] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MDESQPKTLY VGNLDSSVSE DLLIALFSTM GPVKSCKIIR EPGNDPYAFI EYSNYQAATT 60
61 ALTAMNKRLF LEKEIKVNWA TSP
|
| Detection Method: |  |
| Confidence: | 48.30103 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 0.873765500321315 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [84-302] |
1 11 21 31 41 51
| | | | | |
1 GNQPKTDISS HHHIFVGDLS PEIETETLRE AFAPFGEISN CRIVRDPHTM KSKGYAFVSF 60
61 VKKAEAENAI QAMNGQWIGS RSIRTNWSTR KLPPPREPSK GGGQGGGMGG GPGNGSGVKG 120
121 SQRHTFEEVY NQSSPTNTTV YCGGFPPNVI SDDLMHKHFV QFGPIQDVRV FKDKGFSFIK 180
181 FVTKEAAAHA IEHTHNSEVH GNLVKCFWGK ENGGDNSAN
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1qm9A |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 0.873765500321315 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [303-464] |
1 11 21 31 41 51
| | | | | |
1 NLNAAAAAAA ASANVAAVAA ANAAVAAGAG MPGQMMTQQQ IAAATGAAIP GQMMTPQQIA 60
61 AQYPYAYQQM GYWYPPATYP TTQMQTQYMQ QGYYPYAYPT SAQQAGGVPA GYRMVPPNVA 120
121 WGVPGTVVPG VTAAAASAAA AANGSLAPQM MYSAAMPQYQ TQ
|
| Detection Method: | |
| Confidence: | 5.045757 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
