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View Structure Prediction Details

Protein: eIF-3p66-PB
Organism: Drosophila melanogaster
Length: 560 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eIF-3p66-PB.

Description E-value Query
Range
Subject
Range
gi|7141239 - gi|7141239|gb|AAF37264.1|AF220363_1 eukaryotic translation initiation factor 3 p66 subunit [Drosophi...
921.0 [0..1] [560..1]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETINTAAQ FPSFEKPTVQ FNEKGWGPCE LPDTFKDVPY QPFSKNDRLG KICDWTNTSN  60
   61 NDKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [65-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQNKYASSFG TGIQYSYYHE EDETTFHLVD TARVQKPPHQ RGRFRNMRNS RSGRGRNARG  60
   61 GLNTHGMTTL SGKNVKARDP RHGRGMGKKF GHRGPPPKMR ESSVAVRADW ASIEEMDFPR 120
  121 LIKLSLPNIK EGVDIVTCGT LEYYDKTYDR INVKNEKPLQ KIDRIVHTVT TTDDPVIRRL 180
  181 SKTVGNVFAT DAILATIMCS TRSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [269-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSWDIVIEKV GDKVFMDKRD HTEFDLLTVN ESSVEPPTDD DSSCNSPRNL AIEATFINHN  60
   61 FSQQVLKTGD QEPKYKFEES NPFISEDEDI QVASVGYRYK KWEL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [373-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSDIVLVARC EHDGVLQTPS GEPQFMTIKA LNEWDSKLAN GVEWRQKLDT QRGAVLANEL  60
   61 RNNACKLAKW TVQAVLAGSD QLKLGYVSRI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [463-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPRDHSRHVI LGTQQFKPHE FATQINLSMD NAWGILRCII DLVMKQKDGK YLIMKDPNKP  60
   61 IIRLYDIPDN TFDSDDSDDG EGDDEGFQQV YNYAHNKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle