| Protein: | nhr-264 |
| Organism: | Caenorhabditis elegans |
| Length: | 408 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-264.
| Description | E-value | Query Range |
Subject Range |
|
|
269.0 | [0..3] | [405..46] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MEAERQYGEF IYFCQNVGVI LFETCMIKPT FNVVKTAFPL KVYNYIKTKA SNFTKNSEPC 60
61 QVCQDSASTR HHFGITSCTA CASFFRRTTM NQFTCNLDNN CSVSYKKKWV CRACRYNNCI 120
121 RAGMSKDYIR RGNVD
|
| Detection Method: |  |
| Confidence: | 21.39794 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-408] |
1 11 21 31 41 51
| | | | | |
1 ETKNRKTFRK RTIRNSIRRN KSSLNRISEP VKMDQNSTSR SSTSSSIKHS SDTSTEFSKI 60
61 LHLSNDELLQ FYLKEVERTM VQKQRGLAKN ALLAESMNEL MIISAYQNGL SMESCMHCPG 120
121 VNSLEKEDVQ TLLKYFQFAN VWMDSVRAYS MSNVDIYETT PKDKRLSEYI QQVKLTLGSS 180
181 FSQLKLNLYE FAALKSYCIW NMGFFETSIA MKIIAREHYI GVTAALRNYY RTQTKMSDMD 240
241 IAIRIGDITL QIITVSNMFH DMAKLSYQCG LTF
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.31508164334985 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 2.20996397516696 | bayes_pls_golite062009 |
| transcription regulator activity | 2.02157665604796 | bayes_pls_golite062009 |
| DNA binding | 1.47175550190876 | bayes_pls_golite062009 |
| signal transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| molecular transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| protein binding | 1.34648900580465 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29377568150934 | bayes_pls_golite062009 |
| receptor activity | 1.17902442273252 | bayes_pls_golite062009 |
| transcription activator activity | 0.96843436755116 | bayes_pls_golite062009 |
| transcription factor activity | 0.92060883178562 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.67007540744134 | bayes_pls_golite062009 |
