| Protein: | orb-PA, FBpp0306565 |
| Organism: | Drosophila melanogaster |
| Length: | 915 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for orb-PA, FBpp0306565.
| Description | E-value | Query Range |
Subject Range |
|
|
519.0 | [0..1] | [915..1] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MPLLQQYDTP DCSGSGGNMR ALSGGSTTEL LQKHSISSYL DHHHQQQQQQ QHHLQLQQHQ 60
61 QQHSLLERCN DDGLISFIND PITLNDLLGL CGASTANEVV GTGQTPSTSA PILGAGGGGR 120
121 ANGVTAGAAT ATGVGVGAGG TLPGPGVPSI QGGGG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [156-330] |
1 11 21 31 41 51
| | | | | |
1 GGVVGQQTNA SCNTSAANPS ASFGGNGSSS DVNNLLLASA AAAAAAAAGD GAQLSANAAA 60
61 YAPLTPSSTH SSASPGTKSN FDYFQFENVA QSNPLKAFQR TNISFDCSAP LSPSTPTSIY 120
121 NRSFHSSPLV SDSSNSSSGI GLSMDSINMF YNQQQQQQQP EQQGYTSLGN SMGSG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [331-566] |
1 11 21 31 41 51
| | | | | |
1 LGLSLANAST RSNSPESQNS SNSTTEQNLL DMINLLSVNS NKIPHQQQQQ QQQQQQQQQQ 60
61 QQQNQQQLQV QQQHQLQQQF VNLNRNYEQQ ISANLGSQQH GFEHNGVGVG ASSSGNENCF 120
121 SQYNLENITS VDMELAKLQN LQRINTLKLL HAQAQQMPLI NQLLQSYAGN AIGSVGGSNL 180
181 GNLMSAGGSS LMTEMAGNVG GIITTNDGHL DRVAKFYKSS AALCDATCTW SGHLPP
|
| Detection Method: | |
| Confidence: | 1.05 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [567-779] |
1 11 21 31 41 51
| | | | | |
1 RSHRMLNYSP KVFLGGIPWD ISEQSLIQIF KPFGSIKVEW PGKEQQAAQP KGYVYIIFES 60
61 DKQVKALLSA CVLQVDDSHC GRNYFFKISS RRIKSKDVEV IPWIIADSNF VRSSSQKLDP 120
121 TKTVFVGALH GKLTAEGLGN IMDDLFDGVL YAGIDTDKYK YPIGSGRVTF SNFRSYMKAV 180
181 SAAFIEIRTT KFTKKVQVDP YLEDALCSIC GVQ
|
| Detection Method: | |
| Confidence: | 58.045757 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.63987691433124 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
| mRNA binding | 3.54495985180603 | bayes_pls_golite062009 |
| binding | 3.00411894202318 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| 1.71820051628117 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.862661444935922 | bayes_pls_golite062009 |
| transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
| DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.366758605553422 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| transcription activator activity | 0.119266921032347 | bayes_pls_golite062009 |
| structural molecule activity | 0.0829058000493267 | bayes_pls_golite062009 |
|
Region A: Residues: [780-915] |
1 11 21 31 41 51
| | | | | |
1 HGPYYCRELS CFRYFCRSCW QWQHSCDIVK NHKPLTRNSK SQSLVGIGPS SSNVSLPFSG 60
61 QRSIRDNRMG NGQHQQHQQH QYQQQKHRQL QEYSQPHSLN VMGNSGAANA AATSMVTLQQ 120
121 RQIHKVRIQR QQHQAI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
