| Protein: | HP1c-PA |
| Organism: | Drosophila melanogaster |
| Length: | 237 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HP1c-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
246.0 | [0..1] | [237..1] |
|
|
192.0 | [0..4] | [184..768] |
|
|
190.0 | [0..4] | [184..768] |
|
|
190.0 | [0..4] | [184..769] |
|
|
189.0 | [0..4] | [184..769] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MVKNEPNFVV ERIMDKRITS EGKVEYYIKW RGYTSADNTW EPEENCDCPN LIQKFEESRA 60
61 KSKKRGEKKP KCEEIQKLRG YERGLELAEI VGATDVTGDI KYLVRWQFCD EFDLVPSAQI 120
121 VEKDPQMLID YFQKMAPYSR HIAMRMKGVP EELRLAASRT SYPHISSAPV EVPP
|
| Detection Method: |  |
| Confidence: | 15.30103 |
| Match: | 2b2uA |
| Description: | Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [175-237] |
1 11 21 31 41 51
| | | | | |
1 EVDQSAELAG HLGGIAPQVD QAPQHHAPMD LANDTDDLAS VSYSIPVPGV GDIAIDVPMA 60
61 ENQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.604 | a.4.1 | Homeodomain-like |
| View | Download | 0.590 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.545 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.536 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.528 | a.4.1 | Homeodomain-like |
| View | Download | 0.523 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.495 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.434 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.402 | a.4.1 | Homeodomain-like |
| View | Download | 0.356 | a.60.12 | DNA polymerase beta-like, second domain |
