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Protein Overview: gi|109508460

General Information:
Name(s) found: gi|109508460 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|109508460|ref|XP_001062696.1| PREDICTED: similar to chromodomain helicase DNA binding protein 9 isoform 2 [Rattus norvegicus] [NCBI NR]
    • Organism: Rattus norvegicus
    Length: 2867 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    chromatin [IEA]
    Biological Process: chromatin assembly or disassembly [IEA]
    Molecular Function: DNA binding [IEA]
    ATP binding [IEA]
    helicase activity [IEA]
    chromatin binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDPMMDFFD DANLFGETLE GLSDDAFVQP GPVSLVDELN LGAEFEPLHI DSLNHVQGTP  60
   61 VHQKMADFEQ LNQFDSMKFH QVNQSFGSPV EHVLSPHSQF NCSPIHPPNQ PNGLFQDVAD 120
  121 GSPMWGHQTA TGLSNQNGSP FHQQGHSHSL HQNKSFVTHH DFALFQAGEH QTQCSSLRSQ 180
  181 QNRTNLNPGQ NSLGQAKSFI DTNVSGAHRV NVNHLTSAPS SQQTLPVQFS PTANPPAHFL 240
  241 KCSSQQDGSY NRPSPSMTSC SVSNSQPFPA HYSFSSGHVS PSSLLQSPAG LTPSHSNQAL 300
  301 SDFAGSNSFS PHRGMKQEPT PHILNPTPSL NSNNFQILHS SHPQGNYSNS KLSPMHMDFP 360
  361 DPADSGPPMG HFNDHVETNG FSSLDENLLH QVESHAEPFA GLDPEDLLQE GLLPQFDESP 420
  421 FGQDNSNHVL DHDLDRQFTS HLMARPSDMA QTQLQYQARG WPSPLPNSHQ HVPSRSHLCL 480
  481 QRQPPSSKKS DGSGTYSRLQ NTQVRVMSEK KPRKKAESES KQEKANRIIS EAIARAKERG 540
  541 ERNIPRVMSP ENFPSSSVDG KEEKRAQRVK SKPKDRDNRK PKACSKLKEK TKIGKLIITL 600
  601 GKNHKRRSES SDELSDAEQM PQHTFKEQHS QKRRSNRQVK RKKYAEDAEG RQCEEEVRGS 660
  661 LKVKRTSAPP PGEQPLQLFV ENPSEEDAAI VDKILACRTV KKEVSPGVML DIEEFFVKYK 720
  721 NYSYLHCEWA TEQQLLKDKR IQQKIKRFKL RQAQRAHFLA DMEEEPFNPD YVEVDRILEV 780
  781 SFCEDKDTGE SVVYYLVKWC SLPYEDSTWE LKEDVDLAKI EEFEQLQASR PDTRQLDRPP 840
  841 SNIWKKIDQS REYKNGNQLR EYQLEGLNWL LFNWYNRRNC ILADEMGLGK TIQSITFLYE 900
  901 VLLTGIRGPF LIIAPLSTIA NWEREFRTWT DINVVVYHGS LISRQMIQQY EMYFRDSQGR 960
  961 IIRGAYRFQA IITTFEMILG GCGELNAIEW RCVIIDEAHR LKNKNCKLLE GLKLMNLEHK1020
 1021 VLLTGTPLQN TVEELFSLLH FLEPLRFPSE STFMQEFGDL KTEEQVQKLQ AILKPMMLRR1080
 1081 LKEDVEKRLA PKEETIIEVE LTNIQKKYYR AILEKNFSFL SKGAGQTNVP NLVNTMMELR1140
 1141 KCCNHPYLIK GAEEKIIGEF RDTYNPSASD FHLQAMIQSA GKLVLIDKLL PKMKAGGHKV1200
 1201 LIFSQMVRCL DILEDYLIHK RYLYERIDGR VRGNLRQAAI DRFSKPDSDR FVFLLCTRAG1260
 1261 GLGINLTAAD TCIIFDSDWN PQNDLQAQAR CHRIGQNKAV KVYRLVTRNS YEREMFDRAS1320
 1321 LKLGLDKAVL QSMSGRDSNV SGIQQLSKKE IEDLLRRGAY GAIMEEEDEG SKFCEEDIDQ1380
 1381 ILLRRTKTIT IESEGCGSTF AKASFVASGN RTDISLDDPN FWQKWAKKAE LDLDAISGRN1440
 1441 SLVIDTPRIR KQTRPFSATK DELAELSEAE SEGEEKPKLR RPCDRSGGYG RTECFRVEKN1500
 1501 LLVYGWGRWR EILSHGRFKR QLNEHDVEVI CRALLAYCLV HYRGDEKIKG FIWDLITPTE1560
 1561 DGQTRELQNH LGLSAPVPRG RKGKKVKTQT SSFDIQKAEW LRKYNPEQLL QDEGYKKHVK1620
 1621 HHCNKVLLRV RMLYYLKQEV IGNESQKVFD GVDASDIDVW VPEPDHSEVP AAWWDFDADK1680
 1681 SLLIGVFKHG YEKYNTIRAD PALCFLERVG KPDEKAVAAE QRANDYMDGD VEDPEYKPAP1740
 1741 AIFKDDIEDD VSSPGDLVIA DGEGQLMEGD KVYWPTPSAL TTRLRRLITA YQRTNKNRHI1800
 1801 QQAQPTFSVP ASVMQPLYEE AALNPKMAAK IERQQRWTRR EEADFYRVVS TFGVVFDPDR1860
 1861 GQFDWTKFRA LARLHKKTDN SLEKYLCAFM AMCRRVCRLP SKEELVDPNI FIQPITEERA1920
 1921 SRTLYRIELL RKVREQALRH PQLFERLKLC HPNPDLPIWW ECGSHDRDLL IGAAKHGVSR1980
 1981 TDYHILRDPE LSFMAAQRSY SQSKVTHSRT STPLLQQYQV VLSASPLTSS PRLLGAKGPL2040
 2041 VEDVRVKSES LAEEPQSSEE ESMSSMETRT RVKSEPVSPK NGVLSQAPGE QKSGGKSETD2100
 2101 RRMVAARTEP LTPNPASKKQ RVHKRGSESS SDSDSDSERS SCSSRSSSSS SSSSCSHSRS2160
 2161 GSSSSSSSSC SSASSSSSSS SSSSSSSSSS SSEESDSEEE VQKREGTPHA KAYDEESVAS2220
 2221 LSATQDETQD GTQDSFQASN GAPESAHLLQ GGYMLAASYW PKDRVMINRL DSICQTVLKG2280
 2281 KWPSARRHYD ANTVASFYTT KLLDSPGAAT EYSEPSVPTP PAVAVKEEHE QSPQMSKEGG2340
 2341 LKLTFQKQGL AQKRPFDGED GAVGQQQCLP RPRELQSTSE TSVVNTSKSI PASGSSIQST2400
 2401 LGANGAILDS QPIVKKRRGR RRNVEGADIL FLNRNKPPNH ISTGMNPALS YPQPQRIPDT2460
 2461 ESPVPVINLK DGTRLAGDDA PKRKDLDRWL KEHPGYVEDL GAFIPRVQLH EGRPKQKRHR2520
 2521 CRNPNKLDVN SLTGEERVQL INRRNARKVG GAFAPPLKDL CRFLKENSEY GVAPEWGDVV2580
 2581 KQSGFLPESM YERILTGPVV REEVSRRGRR PKSGVPKATI AAAAPGSSGP GNPLLANGLL2640
 2641 PGVDLTALQA LQQNLQNLQS LHVTAGLMGM PAGLSSGGEA KTMAAMFPML FSGMAGLPNL2700
 2701 LGMGGLLSKT AESGAEGKKG NDSKELEGKK ERTESQSPEN GGERCVPGSP STSSTAAATK2760
 2761 PLALNPLLLS NMLYPGMLLT PGLNLHLPAL SQSNTFDVQK NKSSDLESSK SVEIKEEDSR2820
 2821 GRDQEEKGGT EPSPLNENST DEGSERASSG SDSSSSSSED SDSSNED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.34

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle