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Protein Overview: HP1c-PA

General Information:
Name(s) found: HP1c-PA / FBpp0083702 [FlyBase]
Description(s) found:
Found 22 descriptions.
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  • The gene HP1c is referred to in FlyBase by the symbol Dmel\HP1c (CG6990, FBgn0039019). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:18571350..18572327. It has the cytological map location 94C4. There is experimental evidence that it has the molecular function</span>: protein binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: chromatin assembly or disassembly. 9 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 237 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    polytene chromosome interband [IDA]
    protein complex [IDA]
    chromatin [IEA]
    Biological Process: chromatin assembly or disassembly [IEA]
    Molecular Function: protein binding [IPI]
    chromatin binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKNEPNFVV ERIMDKRITS EGKVEYYIKW RGYTSADNTW EPEENCDCPN LIQKFEESRA  60
   61 KSKKRGEKKP KCEEIQKLRG YERGLELAEI VGATDVTGDI KYLVRWQFCD EFDLVPSAQI 120
  121 VEKDPQMLID YFQKMAPYSR HIAMRMKGVP EELRLAASRT SYPHISSAPV EVPPEVDQSA 180
  181 ELAGHLGGIA PQVDQAPQHH APMDLANDTD DLASVSYSIP VPGVGDIAID VPMAENQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] PSI-BLAST 15.30103 Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2
    2 View Details [175..237] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle