YRC Public Data Repository - Protein Structure Prediction

Protein:	CG7046-PA
Organism:	Drosophila melanogaster
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG7046-PA.

Description	E-value	Query Range	Subject Range
gi\|89243259 - gi\|89243259\|gb\|ABD64780.1\| pan variant 1 [Drosophila virilis]	127.0	[0..3]	[132..128]
gi\|47215274 - gi\|47215274\|emb\|CAF97001.1\| unnamed protein product [Tetraodon nigroviridis]	127.0	[0..2]	[121..98]
gi\|33415942 - gi\|33415942\|gb\|AAQ18508.1\| transcription factor Sox9b [Takifugu rubripes]	126.0	[0..2]	[121..98]
gi\|185134049, gi... - gi\|185134049\|ref\|NP_001117742.1\| SOX9 alpha2 [Oncorhynchus mykiss], gi\|12003242\|gb\|AAG43497.1\|AF2098...	124.0	[0..2]	[120..102]
gi\|14290109 - gi\|14290109\|gb\|AAK59255.1\| HMG box transcription factor Sox9a2 [Monopterus albus]	124.0	[0..3]	[121..102]
gi\|76446625, gi\|... - gi\|76446625\|gb\|ABA43067.1\| HMG box transcription factor Sox9 [Carassius auratus x Cyprinus carpio x ...	124.0	[0..3]	[121..93]
gi\|50512586 - gi\|50512586\|gb\|AAT77677.1\| sox9 [Epinephelus akaara]	124.0	[0..2]	[121..98]
gi\|34223471 - gi\|34223471\|gb\|AAQ62978.1\| Sox9a transcription factor [Gasterosteus aculeatus]	123.0	[0..2]	[121..98]
gi\|109495090 - gi\|109495090\|ref\|XP_001072913.1\| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High m...	123.0	[0..5]	[129..235]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYGARPKK PMSAFMLWMN STGRKNIRAE HPDFSVQEVS VKGGEMWRAM ADEHKIVWQE  60
   61 SASKAMAEYK EKLEKWNAFK EHQTESFPHI YEAPLSSRFS KTNQRPTLFV YDSKDEAMAP 120
  121 ICRTCFSKAK CFH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2gzkA
Description:	No description for 2gzkA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.26755196728921	bayes_pls_golite062009
DNA binding	2.03780473573063	bayes_pls_golite062009
nucleic acid binding	2.00291826513887	bayes_pls_golite062009
transcription regulator activity	1.45511614877724	bayes_pls_golite062009
transcription factor activity	0.67382013107512	bayes_pls_golite062009
sequence-specific DNA binding	0.51993861167199	bayes_pls_golite062009
protein binding	0.0196173588513679	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: