YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SNF4Agamma-PG
Organism: Drosophila melanogaster
Length: 814 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF4Agamma-PG.

Description E-value Query
Range
Subject
Range
PRKAG2 - protein kinase, AMP-activated, gamma 2 non-catalytic subunit
326.0 [0..62] [645..8]

Back

Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRRRYSAFE PSTPRVGVLP SPPPQYANPP ADTAAPKTPP KLSVHFDPNL PKDNDSNNNL  60
   61 TGSENANAKG GGRKARSLSN SPLYHRKKRY GHLPALMSNN GPTASSNYQL LNSANLRDLI 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGQRHSHHVS RRDDSQSHSH SESPSHIGHI SQSNQSIPSL PSLPSGKNKT KDGKKLKATL  60
   61 TAAMSSSLLR RKAHSNHSQQ QKLQLQQQQQ EQHQQQLQQQ QLRSNNSKAI ANAARHSLGH 120
  121 SPSAAAAAAA VQQTLVYERR RVSSAHSSPS PTSRHHSPVH QCMLMRRRSD YSVEQIEQWK 180
  181 RQQQLLPRSG RKISLPVADP FLEKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [326-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLSDLEEDDS QIFVKFFRFH KCYDLIPTSA KLVVFDTQLL VKKAFYALVY NGVRAAPLWD  60
   61 SEKQQFVGML TITDFIKILQ MYYKSPNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.522879
Match: 2v8qE
Description: No description for 2v8qE was found.

Predicted Domain #4
Region A:
Residues: [414-568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMEQLEEHKL DTWRSVLHNQ VMPLVSIGPD ASLYDAIKIL IHSRIHRLPV IDPATGNVLY  60
   61 ILTHKRILRF LFLYINELPK PAYMQKSLRE LKIGTYNNIE TADETTSIIT ALKKFVERRV 120
  121 SALPLVDSDG RLVDIYAKFD VINLAAEKTY NDLDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 2j9lA
Description: No description for 2j9lA was found.

Predicted Domain #5
Region A:
Residues: [569-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLRKANEHRN EWFEGVQKCN LDESLYTIME RIVRAEVHRL VVVDENRKVI GIISLSDILL  60
   61 YLVLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.221849
Match: 2uv4A
Description: No description for 2uv4A was found.

Predicted Domain #6
Region A:
Residues: [634-814]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSGEGVGGSE SSLRASDPVL LRKVAEVEIP ATAAAATTTT PPRSPSAGSG NRSLIEDIPE  60
   61 EETAPARSDD ADSDNNKSAS EDKANNNQHD QTTTAATANG DSNNSPVEVS FADEAQEEEA 120
  121 ADQVERSNCD DDDQPALAEI ERKNASMDDD EDDGMSSAVS AASALGQSLT PAAQEMALVS 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1ypfA
Description: Crystal Structure of GuaC (BA5705) from Bacillus anthracis at 1.8 A Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle