| Protein: | CstF-64-PA |
| Organism: | Drosophila melanogaster |
| Length: | 419 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CstF-64-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
287.0 | [0..3] | [416..178] |
|
Region A: Residues: [1-189] |
1 11 21 31 41 51
| | | | | |
1 MADKAQEQSI MDKSMRSVFV GNIPYEATEE KLKEIFSEVG PVLSLKLVFD RESGKPKGFG 60
61 FCEYKDQETA LSAMRNLNGY EIGGRTLRVD NACTEKSRME MQQLLQGPQV ENPYGEPCEP 120
121 EDAPELITKT VASLPPEQMY ELMKQMKLCI VSNPSEARQM LMLNPQLAYA LLQAMVVMRI 180
181 VDPQQALGM
|
| Detection Method: |  |
| Confidence: | 22.522879 |
| Match: | 1p1tA |
| Description: | NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| 3.4479220904723 | bayes_pls_golite062009 | |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| snRNA binding | 0.73428616955527 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [190-263] |
1 11 21 31 41 51
| | | | | |
1 LFKANQMPPV LGGNPHQGPG NHTMMGQQQV PQQQVQIPQQ QQQAPQPPMP VPGPGFPANV 60
61 HPNDIDLRMV PGGP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [264-419] |
1 11 21 31 41 51
| | | | | |
1 MPMDPRMMGR GMDQDLRASL PNPVPPPLMD PRARAQMPPQ QQQGVPQAPP APYPSDPRQR 60
61 PMDPRLRAGP GPQQQAPPQG IPQAPPPTQQ QQAAAQQLQS RLGAHGVLPS DASDQEKAAL 120
121 IMQVLQLSDE QIAQLPSEQR VSIVMLKEQI AKSTQR
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
