| Protein: | repo-PA |
| Organism: | Drosophila melanogaster |
| Length: | 612 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for repo-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
146.0 | [0..343] | [611..1418] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MEHDSFDDPI FGEFGGGPLN PLGAKPLMPT TTAMHPVMLG SVHELCSQQQ QQQQQQRLPD 60
61 CNTILPNGGG GGAG
|
| Detection Method: |  |
| Confidence: | 1.15 |
| Match: | 1odhA |
| Description: | Mgcm1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [75-285] |
1 11 21 31 41 51
| | | | | |
1 SGGAGGSPNY VTKLDFVNKM GCYSPSQKYE YISAPQKLVE QQQQQQHHHQ HHQHYTATPP 60
61 PSHNGILLHK QSSQQQQQQQ QQLVGILDYH PLNGKLDYSS SPKDQYEPQQ LQHLYGGSPH 120
121 HLDHLDHGSD GLLQDSSPVM INGGSAGGKL KKPDEMCSQL EAGGAGVTPP SSSSTVVNGT 180
181 TNGTGNANSS SSAGVGIQGA AGTAGGVAAP A
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [286-367] |
1 11 21 31 41 51
| | | | | |
1 AKKDGSSSKK KGDPNGIKKK KTRTTFTAYQ LEELERAFER APYPDVFARE ELAIKLNLSE 60
61 SRVQVWFQNR RAKWRKHEPP RK
|
| Detection Method: | |
| Confidence: | 15.154902 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [368-612] |
1 11 21 31 41 51
| | | | | |
1 TGYIKTSTPP TATLNPGTLA PPFTSYPQTT TVTPPGSMDS WTSYQTPYEL TPQFSLLSPA 60
61 ASPYGTYSGQ YGAYVHESQL FPMRHYEYGS PTRMEMGATT GSVAGNGDES VANGGSYQTA 120
121 ELQTAQQQQL ADGTLVTVHA HQQQQQQQQQ LNGKYLSAEE AKYVHLQCHQ SGGGLELSPG 180
181 ASCHLVEAQG QHYVTTATGG AASAGGTSSD DNDSGGMQTV IKSEEVSQQQ QQQQGQSYVL 240
241 PPFLH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
