YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG17283-PA
Organism: Drosophila melanogaster
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17283-PA.

Description E-value Query
Range
Subject
Range
gi|68389578 - gi|68389578|ref|XP_709925.1| PREDICTED: similar to Ctsd protein isoform 6 [Danio rerio]
356.0 [0..86] [462..5]

Back

Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCRILVLCA FICLLVILTE ARQRKVNHSA DRRSLAVRSG HRNERSSALH GRGLAARSRN  60
   61 QRKRRLNAAK RSRRKRNLAR KSNR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIRAKTESIV RSDSSYATLP LDFQQNFVRT TDNLRSEKAF LANRYGFSFA KSSGTATLKN  60
   61 TANMEYTCKM NIGTPKQKFT VLPDTGSSNI WVPGPHCKSK ACKKHKQYHP AKSSTYVKNG 120
  121 KSFAITYGSG SVAGVLAKDT VRIAGLVVTN QTFAMTTKEP GTTFVTSNFD GILGLGYRSI 180
  181 AVDNVKTLVQ NMCSEDVITS CKFAICMKGG GSSSRGGAII FGSSNTSAYS GSNSYTYTPV 240
  241 TKKGYWQFTL QDIYVGGTKV SGSVQAIVDS GTSLITAPTA IYNKINKVIG CRATSSGECW 300
  301 MKCAKKIPDF TFVIAGKKFV VKGNKMKLKV RTNRGRTVCI SAVTEVPDEP VILGDAFIRH 360
  361 FCTEFDLANN RIGFAATTYS T

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.221849
Match: 2psgA
Description: REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aspartic-type endopeptidase activity 7.9145950161796 bayes_pls_golite062009
aspartic-type peptidase activity 7.9145950161796 bayes_pls_golite062009
peptidase activity 5.78181196721293 bayes_pls_golite062009
endopeptidase activity 5.4888481808613 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 5.39972232367526 bayes_pls_golite062009
hydrolase activity 4.34796304893506 bayes_pls_golite062009
catalytic activity 1.54514410489082 bayes_pls_golite062009
binding 0.902062095182608 bayes_pls_golite062009
receptor binding 0.772960860414817 bayes_pls_golite062009
protein binding 0.094081389440774 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle