| Protein: | Brf-PA, Brf-PB |
| Organism: | Drosophila melanogaster |
| Length: | 662 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Brf-PA, Brf-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
458.0 | [0..3] | [662..2] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MSTGLKCRNC GSNEIEEDNA RGDRVCMNCG SVLEDSLIVS EVQFEEVGHG AAAIGQFVSA 60
61 ESSGGATNYG
|
| Detection Method: |  |
| Confidence: | 2.67 |
| Match: | 1rlyA |
| Description: | RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.22680674586367 | bayes_pls_golite062009 |
|
Region A: Residues: [71-283] |
1 11 21 31 41 51
| | | | | |
1 YGKFQVGSGT ESREVTIKKA KKDITLLCQQ LQLSQHYADT ALNFFKMALG RHLTRGRKST 60
61 HIYAACVYMT CRTEGTSHLL IDISDVQQIC SYELGRTYLK LSHALCINIP SLDPCLYIMR 120
121 FANRLQLGAK THEVSMTALR IVQRMKKDCM HSGRRPTGLC GAALLIAARM HDFSRTMLDV 180
181 IGVVKIHEST LRKRLSEFAE TPSGGLTLEE FMT
|
| Detection Method: | |
| Confidence: | 62.045757 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [284-417] |
1 11 21 31 41 51
| | | | | |
1 VDLEREQDPP SFKAARKKDR ERIKDMGEHE LTELQKEIDA HLEKDLGKYS NSVYRQLTKG 60
61 KGLSPLSSPS TPNSSSEKDI ELEESRQFIE QSNAEVIKEL IAKNEDVKKS EPGGLVAGIE 120
121 GLRPDIEAIC RVTQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [418-488] |
1 11 21 31 41 51
| | | | | |
1 SDLEDVEKAK QPQEQELITD DLNDDELDQY VLTEEESVAK LEMWKNLNAE YLQEQKERDE 60
61 RLAKEREEGK P
|
| Detection Method: | |
| Confidence: | 2.39 |
| Match: | 1ngmB |
| Description: | TBP-binding domain of the transcription factor IIIb Brf1 subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [489-662] |
1 11 21 31 41 51
| | | | | |
1 ERKKRKPRKK VIGPSSTAGE AIEKMLQEKK ISSKINYEIL KTLTDGMGGL TDDSPTTSAD 60
61 TKPSTLEELK HQPVIVEEGP VASKSRGNRA AYDLPGPSRK RPKLEVGLPV SKAADVEQAE 120
121 TKPAVVVEAD DLDEDADDPD VEPEAEPEAT LQDMLNTGGD DDEFGYGFDE EEEY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
