YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpS11-PA
Organism:	Drosophila melanogaster
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpS11-PA.

Description	E-value	Query Range	Subject Range
gi\|66803723 - gi\|66803723\|gb\|AAY56634.1\| mitochondrial ribosomal protein S11 [Drosophila simulans]	227.0	[0..1]	[200..1]
gi\|19528639 - gi\|19528639\|gb\|AAL90434.1\| RH70248p [Drosophila melanogaster]	211.0	[0..1]	[200..1]
gi\|58384747, gi\|... - gi\|58384747\|ref\|XP_313411.2\| AGAP003644-PA [Anopheles gambiae str. PEST], gi\|55241118\|gb\|EAA08943.2\|... AGAP003644-PA - mRpS11: 28S ribosomal protein S11, mitochondrial\|protein_coding\|2R:40925228:40925982:1\|gene:AGAP0036...	193.0	[0..18]	[200..16]
gi\|54638826, gi\|... - gi\|54638826\|gb\|EAL28228.1\| GA18718-PA [Drosophila pseudoobscura], gi\|125775850\|ref\|XP_001359085.1\| G...	186.0	[0..13]	[200..19]
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	186.0	[0..86]	[200..17]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	185.0	[0..86]	[200..17]
RS11_MARMM - 30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1	183.0	[0..73]	[200..2]
gi\|222056681, gi... - gi\|222056681\|ref\|YP_002539043.1\| ribosomal protein S11 [Geobacter sp. FRC-32], gi\|221565970\|gb\|ACM21...	183.0	[0..86]	[200..17]
gi\|157109892, gi... - gi\|157109892\|ref\|XP_001650870.1\| mitochondrial ribosomal protein, S11, putative [Aedes aegypti], gi\|...	183.0	[0..10]	[200..2]
RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens GN=rpsK PE=3 SV=1 RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rpsK ...	182.0	[0..86]	[200..17]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKSVFLSA LRSITMPAVP LQTSRIHTSA CWRKAEDRKE MLASLPAKDE GTVGEKTVDI  60
   61 DTLINRKAKF FPDASTANT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFNGIPFNEL PICNIRVSPN NTIISVTDHK GVLRLIRSCG IEGFKNTRKG TNIAAQATAV  60
   61 TISGKAIELG WKTVRVKVRG LGPGRMSAIK GLQMGGLNIV SITDNTHVSF NPPRPRKQRS 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1vs5K
Description:	No description for 1vs5K was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.83351366956976	bayes_pls_golite062009
structural molecule activity	9.25292687983044	bayes_pls_golite062009
RNA binding	1.52264031918826	bayes_pls_golite062009
nucleic acid binding	0.983215686081669	bayes_pls_golite062009
binding	0.558121720172199	bayes_pls_golite062009
rRNA binding	0.357032493028	bayes_pls_golite062009
catalytic activity	0.249767694451989	bayes_pls_golite062009
translation regulator activity	0.17520676474539	bayes_pls_golite062009
protein binding	0.013467373576568	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: