| Protein: | abd-A-PB |
| Organism: | Drosophila melanogaster |
| Length: | 590 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for abd-A-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
139.0 | [0..3] | [579..23] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MSKFVFDSML PKYPQFQPFI SSHHLTTTPP NSSSAAVAAA LAAAAASASA SVSASSSSNN 60
61 NSSNTIAGSN TSNTNNSSSS PSSSSNNNSN LNLSGGSLSP SHLSQHLGQS PHSPVSSSSP 120
121 FQQHHPQVQQ QHLNHQQQQH LHHQQQQHHH QYSSLSA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [158-293] |
1 11 21 31 41 51
| | | | | |
1 ALQLQQQQHH ISKLAAAAVA SHGHAHQQLL LTPPSAGNSQ AGDSSCSPSP SASGSSSLHR 60
61 SLNDNSPGSA SASASASAAS SVAAAAAAAA AAASSSFAIP TSKMYPYVSN HPSSHGGLSG 120
121 MAGFTGLEDK SCSRYT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [294-383] |
1 11 21 31 41 51
| | | | | |
1 DTVMNSYQSM SVPASASAQF AQFYQHATAA ASAVSAASAG AIGVDSLGNA CTQPASGVMP 60
61 GAGGAGGAGI ADLPRYPWMT LTDWMGSPFE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [384-488] |
1 11 21 31 41 51
| | | | | |
1 RVVCGDFNGP NGCPRRRGRQ TYTRFQTLEL EKEFHFNHYL TRRRRIEIAH ALCLTERQIK 60
61 IWFQNRRMKL KKELRAVKEI NEQARRDREE QEKMKAQETM KSAQQ
|
| Detection Method: | |
| Confidence: | 12.30103 |
| Match: | 1b8iA |
| Description: | Ultrabithorax (ubx) homeodomain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.57523737355937 | bayes_pls_golite062009 |
| DNA binding | 3.00143272905695 | bayes_pls_golite062009 |
| nucleic acid binding | 2.89825020286436 | bayes_pls_golite062009 |
| transcription factor activity | 2.53664874743748 | bayes_pls_golite062009 |
| binding | 1.68817361068715 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.46503550280898 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.24108783215685 | bayes_pls_golite062009 |
| transcription repressor activity | 0.20862059645422 | bayes_pls_golite062009 |
| protein binding | 0.111941607625758 | bayes_pls_golite062009 |
|
Region A: Residues: [489-590] |
1 11 21 31 41 51
| | | | | |
1 NKQVQQQQQQ QQQQQQQQQQ QHQQQQQQPQ DHHSIIAHNP GHLHHSVVGQ NDLKLGLGMG 60
61 VGVGVGGIGP GIGGGLGGNL GMMSALDKSN HDLLKAVSKV NS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
