| Protein: | Rbf2-PA |
| Organism: | Drosophila melanogaster |
| Length: | 783 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rbf2-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
776.0 | [0..11] | [779..198] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 METCEVEGEA ETLVRRFSVS CEQLELEARI QQSALSTYHR LDAVNGLSTS EADAQEWLCC 60
61 AVYSELQRSK MRDIRESINE ANDSVAKNCC WNVSLTRLLR SFKMNVSQFL RRMEHWNWLT 120
121 QNENTFQLEV EELRCRLGIT STLLRHYKHI FRSLFVHPGK GADPGAAN
|
| Detection Method: |  |
| Confidence: | 38.69897 |
| Match: | 1c9bA |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclin-dependent protein kinase regulator activity | 4.0678067833198 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 3.72590522082801 | bayes_pls_golite062009 |
| protein kinase regulator activity | 3.60228514328814 | bayes_pls_golite062009 |
| kinase regulator activity | 3.4358680585811 | bayes_pls_golite062009 |
| transcription regulator activity | 2.795846725429 | bayes_pls_golite062009 |
| binding | 2.4204867358489 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04886889839181 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.00665312545368 | bayes_pls_golite062009 |
| DNA binding | 1.94297811210385 | bayes_pls_golite062009 |
| protein binding | 1.47106731485576 | bayes_pls_golite062009 |
| transcription repressor activity | 1.42956126861466 | bayes_pls_golite062009 |
| transcription factor activity | 1.21921365719206 | bayes_pls_golite062009 |
| transcription factor binding | 0.749278791251235 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.729629809946521 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.138191616709499 | bayes_pls_golite062009 |
| transcription activator activity | 0.0696060248241566 | bayes_pls_golite062009 |
|
Region A: Residues: [169-303] |
1 11 21 31 41 51
| | | | | |
1 HYQALYEFGW LLFLVIRNEL PGFAITNLIN GCQVLVCTMD LLFVNALEVP RSVVIRREFS 60
61 GVPKNWDTED FNPILLNKYS VLEALGELIP ELPAKGVVQM KNAFFHKALI MLYMDHSLVG 120
121 DDTHMREIIK EGMLD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [304-363] |
1 11 21 31 41 51
| | | | | |
1 INLENLNRKY TNQVADISEM DERVLLSVQG AIETKGDSPK SPQLAFQTSS SPSHRKLSTH 60
61
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [364-702] |
1 11 21 31 41 51
| | | | | |
1 DLPASLPLSI IKAFPKKEDA DKIVNYLDQT LEEMNRTFTM AVKDFLDAEL SGKRFRQARG 60
61 LYYKYLQKIL GPELVQKPQL KIGQLMKQRK LTAALLACCL ELALHVHHKL VEGLRFPFVL 120
121 HCFSLDAYDF QKILELVVRY DHGFLGRELI KHLDVVEEMC LDSLIFRKSS QLWWELNQRL 180
181 PRYKEVDAET EDKENFSTGS SICLRKFYGL ANRRLLLLCK SLCLVDSFPQ IWHLAEHSFT 240
241 LESSRLLRNR HLDQLLLCAI HLHVRLEKLH LTFSMIIQHY RRQPHFRRSA YREVSLGNGQ 300
301 TADIITFYNS VYVQSMGNYG RHLECAQTRK SLEESQSNV
|
| Detection Method: | |
| Confidence: | 119.0 |
| Match: | 2r7gA |
| Description: | No description for 2r7gA was found. |
|
Region A: Residues: [703-783] |
1 11 21 31 41 51
| | | | | |
1 GILTETTSNE LSMRANISIS SPPPPRVCQS GSCSSHPPSS PAASPLSLQS SPNVKRAASS 60
61 NDLMREIKRP NILRRRQLSV I
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
