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View Structure Prediction Details

Protein: primo-2-PC
Organism: Drosophila melanogaster
Length: 164 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for primo-2-PC.

Description E-value Query
Range
Subject
Range
gi|108881343, gi... - gi|157134870|ref|XP_001656483.1| low molecular weight protein-tyrosine-phosphatase [Aedes aegypti], ...
185.0 [0..3] [163..42]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRSQKSSV LMVCVGNLCR SPIAEAVMRD LVARAGLQGE WHVESAGIED WHSGHQPDER  60
   61 ALNVLARHNI EYNGKARVLA PEDFLEFDYI FAMDLSNLAA LRRMAPKGTT AKLLILGNFG 120
  121 LKPDERIIED PYYDIGEASF EEIYRQCSIA CRNFLKQARL KQIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.39794
Match: 5pntA
Description: CRYSTAL STRUCTURE OF A HUMAN LOW MOLECULAR WEIGHT PHOSPHOTYROSYL PHOSPHATASE. IMPLICATIONS FOR SUBSTRATE SPECIFICITY
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphoprotein phosphatase activity 6.88246946508693 bayes_pls_golite062009
phosphatase activity 6.45415826301085 bayes_pls_golite062009
phosphoric ester hydrolase activity 6.24793868976995 bayes_pls_golite062009
protein tyrosine phosphatase activity 5.42677419561083 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 5.27901564747165 bayes_pls_golite062009
hydrolase activity 3.65742648154352 bayes_pls_golite062009
catalytic activity 1.99182579317454 bayes_pls_golite062009
binding 1.7522117458664 bayes_pls_golite062009
transcription regulator activity 0.628751319213679 bayes_pls_golite062009
acid phosphatase activity 0.62303289859123 bayes_pls_golite062009
nucleic acid binding 0.557666750724006 bayes_pls_golite062009
DNA binding 0.357202336581626 bayes_pls_golite062009
protein binding 0.332591807861153 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle