| Protein: | cwo-PA |
| Organism: | Drosophila melanogaster |
| Length: | 698 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwo-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
186.0 | [0..78] | [698..1] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MEPYWNETNG HAAHPVKYES EAAVSSFPYC TESSLNFSTS ATAYSEDDAE YATGRRNKTS 60
61 RQDPLSHRII EKRRRDRMNS CLADLSRLIP PQYQRKGRGR IEKTEIIEMA IRHLKHLQSE 120
121 CQQKESDYRS GYMDCMKEAA KFLYD
|
| Detection Method: |  |
| Confidence: | 15.30103 |
| Match: | 1an4A |
| Description: | Usf B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.04189889011459 | bayes_pls_golite062009 |
| DNA binding | 1.47769879162301 | bayes_pls_golite062009 |
| transcription regulator activity | 1.40297587472455 | bayes_pls_golite062009 |
| transcription factor activity | 1.37196407054029 | bayes_pls_golite062009 |
| nucleic acid binding | 1.25065254420125 | bayes_pls_golite062009 |
| protein binding | 0.90375176425983 | bayes_pls_golite062009 |
|
Region A: Residues: [146-331] |
1 11 21 31 41 51
| | | | | |
1 VHMQDFCHRL LGRLQEHIDE MFKTDCYKST RSCHMPDNVS ASSGSPHQAY HPPLCHLRDM 60
61 LATSASDVEH SQDHNDVKDL SFRNHLNQLQ RSQQAAAAAA VAAAAVAVAN GSSPASNAGV 120
121 DSKVPLTNGG GTGGAPPAAD NVPSNSTGSG SAAACAGGNS NSSGSNSSNA ASSTICPPAG 180
181 GSCPAK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [332-473] |
1 11 21 31 41 51
| | | | | |
1 VTPLAAHQQP HQAPVITSTA PHHHHHHTDS SHHDFESSRE PILHTDTSNM HSPPPRDLLL 60
61 QQHPHLAHSH HTQDSLMSVR MRNYSESSHE IEHNNNYKYK NHIKERFVHE LHDEETSSEH 120
121 CPVAAHLQSD HSHLQALSEH SK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [474-698] |
1 11 21 31 41 51
| | | | | |
1 DGTEPEIAPI MAKKRKLAEA AANGEIPLEV HTESSNAGAS SANRLDKPSP SFNFSDIKDI 60
61 KAELHNGNSN SSPLLAKLSA VAAAGGQLST PSSTTAPLPP RHTFTVPIFA LHGQGNYYVP 120
121 LNVDYNALVP FLNGMDLLEK SYTSMPVVHP ININVNFMPS SPSASLLAAA AAAAVAVGKQ 180
181 QQQQAVVAAG AGLPLSTNSA AAQAAAVAAA AVAKAKLEQA MNQSW
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
