| Protein: | lds-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1061 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lds-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
407.0 | [0..228] | [1061..2] |
|
Region A: Residues: [1-202] |
1 11 21 31 41 51
| | | | | |
1 MSSENSEYYS DKEEDSVVNN SSLGRSRKSS RLSKSSRLSK SSRPSSAGVV IDETQSEEEE 60
61 SQSSETAESE KSDESDNSQN SQESEDSEDD SVRPSARNTK RKPLGIPSDS EDEEDELEQR 120
121 ALSPSTRMSI TGVRPQDLSD DDSEIEYSDE VQEGPTEAPT AEAVVPRYTT QFAGNIQNDL 180
181 HSTIGAADSE VLDDSSGSDV LI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [203-430] |
1 11 21 31 41 51
| | | | | |
1 LSNKETPIEI LSSTDDDATT NKENMSGPPF ERPSKSLSPR SSAGASVVKT SKNLSQPTIQ 60
61 AVLKQKTSPA APRRSRIKSE DQKVVSQVVY DEEMRKLAEK RVQVSDAEKL FEKVAHKLPD 120
121 KGSQIMKRID TLRRELAMDE QWISALRVQQ SNVPAVRVVK PTLNPPRAPS IDTLDWDELS 180
181 EAVNEIKPVY TGAQGMATFN NQKALTLESL KDLHVSLEDL PGPEVLAE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [431-900] |
1 11 21 31 41 51
| | | | | |
1 DPVGLKVSLM NHQKHALAWM SWRERKLPRG GILADDMGLG KTLTMISSVL ACKNGQEMSE 60
61 GKDESSDSDS EDDKNKKRKS VTGWKSKGRK DTRRGGTLVV CPASLLRQWE SEVESKVSRQ 120
121 KLTVCVHHGN NRETKGKYLR DYDIVVTTYQ IVAREHKSLS AVFGVKWRRI ILDEAHVVRN 180
181 HKSQSSLAVC DLRGKYRWAL TGTPIQNKEL DVYALLKFLR CSPFDDLHTW KKWIDNKSAG 240
241 GQNRLNLLMK SLMLRRTKAQ LQSDGKLNSL PNKELRLIEI SLDKEEMNVY QTVMTYSRTL 300
301 FAQFLHQRAE RETDFNYRSD ANKPTYNQIK DPNGAYYKMH EKFARMAGSK KEVKSHDILV 360
361 LLLRLRQICC HPGLIDAMLD GEESQTMGDH SSDSDTPEID LLAQLNKLAI TDTSTDGQQS 420
421 VANAGDDGPP LLPDEARIAK ASKNLLKRSN PVFNLHRPSS KINMVIQILK
|
| Detection Method: | |
| Confidence: | 47.221849 |
| Match: | 1z63A |
| Description: | Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [901-994] |
1 11 21 31 41 51
| | | | | |
1 TSILKSSDDK AIVVSQWTSV LDILRDHLSK DGVATLSLNG TIPVKNRQDI VNEFNDRNNQ 60
61 KRVLLLSLTA GGVGLNLIGA NHLLLLDLHW NPQL
|
| Detection Method: | |
| Confidence: | 17.39794 |
| Match: | 1fuuA |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [995-1061] |
1 11 21 31 41 51
| | | | | |
1 EAQAQDRIYR VGQKKNVIIY KFMCVDTVEQ RIKGLQDKKL DLADGVLTGA KVSSKLTIDD 60
61 LKGLFGM
|
| Detection Method: | |
| Confidence: | 49.69897 |
| Match: | 1z3iX |
| Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |
|
