Protein: | lds-PA |
Organism: | Drosophila melanogaster |
Length: | 1061 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lds-PA.
Description | E-value | Query Range |
Subject Range |
|
407.0 | [0..228] | [1061..2] |
Region A: Residues: [1-202] |
1 11 21 31 41 51 | | | | | | 1 MSSENSEYYS DKEEDSVVNN SSLGRSRKSS RLSKSSRLSK SSRPSSAGVV IDETQSEEEE 60 61 SQSSETAESE KSDESDNSQN SQESEDSEDD SVRPSARNTK RKPLGIPSDS EDEEDELEQR 120 121 ALSPSTRMSI TGVRPQDLSD DDSEIEYSDE VQEGPTEAPT AEAVVPRYTT QFAGNIQNDL 180 181 HSTIGAADSE VLDDSSGSDV LI |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [203-430] |
1 11 21 31 41 51 | | | | | | 1 LSNKETPIEI LSSTDDDATT NKENMSGPPF ERPSKSLSPR SSAGASVVKT SKNLSQPTIQ 60 61 AVLKQKTSPA APRRSRIKSE DQKVVSQVVY DEEMRKLAEK RVQVSDAEKL FEKVAHKLPD 120 121 KGSQIMKRID TLRRELAMDE QWISALRVQQ SNVPAVRVVK PTLNPPRAPS IDTLDWDELS 180 181 EAVNEIKPVY TGAQGMATFN NQKALTLESL KDLHVSLEDL PGPEVLAE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [431-900] |
1 11 21 31 41 51 | | | | | | 1 DPVGLKVSLM NHQKHALAWM SWRERKLPRG GILADDMGLG KTLTMISSVL ACKNGQEMSE 60 61 GKDESSDSDS EDDKNKKRKS VTGWKSKGRK DTRRGGTLVV CPASLLRQWE SEVESKVSRQ 120 121 KLTVCVHHGN NRETKGKYLR DYDIVVTTYQ IVAREHKSLS AVFGVKWRRI ILDEAHVVRN 180 181 HKSQSSLAVC DLRGKYRWAL TGTPIQNKEL DVYALLKFLR CSPFDDLHTW KKWIDNKSAG 240 241 GQNRLNLLMK SLMLRRTKAQ LQSDGKLNSL PNKELRLIEI SLDKEEMNVY QTVMTYSRTL 300 301 FAQFLHQRAE RETDFNYRSD ANKPTYNQIK DPNGAYYKMH EKFARMAGSK KEVKSHDILV 360 361 LLLRLRQICC HPGLIDAMLD GEESQTMGDH SSDSDTPEID LLAQLNKLAI TDTSTDGQQS 420 421 VANAGDDGPP LLPDEARIAK ASKNLLKRSN PVFNLHRPSS KINMVIQILK |
Detection Method: | |
Confidence: | 47.221849 |
Match: | 1z63A |
Description: | Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [901-994] |
1 11 21 31 41 51 | | | | | | 1 TSILKSSDDK AIVVSQWTSV LDILRDHLSK DGVATLSLNG TIPVKNRQDI VNEFNDRNNQ 60 61 KRVLLLSLTA GGVGLNLIGA NHLLLLDLHW NPQL |
Detection Method: | |
Confidence: | 17.39794 |
Match: | 1fuuA |
Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [995-1061] |
1 11 21 31 41 51 | | | | | | 1 EAQAQDRIYR VGQKKNVIIY KFMCVDTVEQ RIKGLQDKKL DLADGVLTGA KVSSKLTIDD 60 61 LKGLFGM |
Detection Method: | |
Confidence: | 49.69897 |
Match: | 1z3iX |
Description: | Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54 |
Matching Structure (courtesy of the PDB): |