| Protein: | TfIIFalpha-PA |
| Organism: | Drosophila melanogaster |
| Length: | 577 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TfIIFalpha-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
213.0 | [0..9] | [577..77] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MSSASKSTPS AASGSSTSAA AAAAASVASG SASSSANVQE FKIRVPKMPK KHHVMRFNAT 60
61 LNVDFAQWRN VKLERENNMK EFRGMEEDQP KFGAGSEYNR DQREEARRKK FGIIARKYRP 120
121 EAQPWILKVG GKTGKKFKGI REGGVGENAA FYVFTHAPDG AIEAYPLTEW YNFQPIQRYK 180
181 SLSAEEAEQE FGRR
|
| Detection Method: |  |
| Confidence: | 38.30103 |
| Match: | 1f3uB |
| Description: | TFIIF alpha subunit, Rap74 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [195-285] |
1 11 21 31 41 51
| | | | | |
1 KKVMNYFSLM LRKRLRGDEE EEQDPEEAKL IKAATKKSKE LKITDMDEWI DSEDESDSED 60
61 EEDKKKKEQE DSDDGKAKGK GKKGADKKKK K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [286-463] |
1 11 21 31 41 51
| | | | | |
1 RDVDDEAFEE SDDGDEEGRE MDYDTSSSED EPDPEAKVDK DMKGVAEEDA LRKLLTSDEE 60
61 EDDEKKSDES DKEDADGEKK KKDKGKDEVS KDKKKKKPTK DDKKGKSNGS GDSSTDFSSD 120
121 STDSEDDLSN GPPKKKVVVK DKDKEKEKEK ESAASSKVIA SSSNANKSRS ATPTLSTD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [464-577] |
1 11 21 31 41 51
| | | | | |
1 ASKRKMNSLP SDLTASDTSN SPTSTPAKRP KNEISTSLPT SFSGGKVEDY GITEEAVRRY 60
61 LKRKPLTATE LLTKFKNKKT PVSSDRLVET MTKILKKINP VKHTIQGKMY LWIK
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1nhaA |
| Description: | C-terminal domain of the rap74 subunit of TFIIF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
