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View Structure Prediction Details

Protein: CG9804-PA
Organism: Drosophila melanogaster
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9804-PA.

Description E-value Query
Range		 Subject
Range
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus GN=lipB PE=3 SV=1
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=lipB PE=3 SV=...
 217.0 [0..4] [222..1]
gi|46120087, gi|... - gi|67920271|ref|ZP_00513791.1| Lipoate-protein ligase B [Crocosphaera watsonii WH 8501], gi|67857755...
 217.0 [0..3] [221..7]
gi|47216500 - gi|47216500|emb|CAG02151.1| unnamed protein product [Tetraodon nigroviridis]
 216.0 [0..1] [227..1]
LIPB_VIBVY - Octanoyltransferase OS=Vibrio vulnificus (strain YJ016) GN=lipB PE=3 SV=1
 216.0 [0..4] [232..1]
LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus GN=lipB PE=3 SV=1
LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=lipB PE=3 SV=1
 216.0 [0..4] [232..1]
SO1162 - lipoate-protein ligase B
gi|24346816, gi|... - gi|24372745|ref|NP_716787.1| lipoate-protein ligase B [Shewanella oneidensis MR-1], gi|24346816|gb|A...
 213.0 [0..1] [219..1]
LIPB_TRIEI - Octanoyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=lipB PE=3 SV=1
 212.0 [0..7] [224..5]
LIPB_XANAC - Octanoyltransferase OS=Xanthomonas axonopodis pv. citri GN=lipB PE=3 SV=1
LIPB_XANAC - Octanoyltransferase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=lipB PE=3 SV=1
 212.0 [0..9] [228..19]
LIPB_XANC5 - Octanoyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lipB PE=3 SV=1
 212.0 [0..9] [228..19]
gi|46133661 - gi|46133661|ref|ZP_00157534.2| COG0321: Lipoate-protein ligase B [Haemophilus influenzae R2866]
gi|145271241, gi... - gi|145639684|ref|ZP_01795287.1| lipoyltransferase [Haemophilus influenzae PittII], gi|145271241|gb|E...
 211.0 [0..4] [220..1]

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Predicted Domain #1
Region A:
Residues: [1-234] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFVRPLVTV VRAGRHSYSA GLQLQQRLAR SNQILNPPAE FRNYLVLQEH DPVYTVGLRT  60
   61 KDYTAQDEDR LRRLGADFHR TDRGGLITFH GPGQLVAYPI LHLGQFVPSI RWYVATLERM 120
  121 VVEACHQMGI SSAKATKDTG IWVGDNKICA IGIHGSRYVT THGIGLNCCT DLQWFEHIVP 180
  181 CGIEGKGVTS LSKELDRHFP VEEASGALLN SFAKVFECRL QEHAKKPASS AEIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 1w66A
Description: Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminoacyl-tRNA ligase activity 4.025601351766 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 4.02412423650651 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 4.02412423650651 bayes_pls_golite062009
ligase activity 3.51191116674556 bayes_pls_golite062009
catalytic activity 1.99372273395202 bayes_pls_golite062009
phenylalanine-tRNA ligase activity 0.91205340076545 bayes_pls_golite062009
binding 0.521863822270226 bayes_pls_golite062009
serine-tRNA ligase activity 0.410923263101581 bayes_pls_golite062009
glycine-tRNA ligase activity 0.25613083187245 bayes_pls_golite062009
ATP binding 0.18403217430648 bayes_pls_golite062009
adenyl ribonucleotide binding 0.145955341735342 bayes_pls_golite062009
threonine-tRNA ligase activity 0.133891091298639 bayes_pls_golite062009
adenyl nucleotide binding 0.127823774098159 bayes_pls_golite062009
protein binding 0.0101455326199739 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle